RNA id: TU237831


Basic Information

Item Value
RNA id TU237831
length 1818
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G201019
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22866908 ~ 22868838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTTTTTGGCCTGGCATCTGTCAGATCTTCATTTTCTTCCATCAAATCCGTGTTTGCTGCTTGATTTTTTAGAGCAACAGCATTtgctctttcctttcttttttttaattcctgttgCTTTCAATTCCCACTCAAGACGGCGTCCATTTTTTAACGGAATGGAAATGGGGACTTCCAAATTTCCAATGTGTCAATTGGTcccacttatttttttatttataaaaaaaagtacaaaaaaacagGGAAACTGTCCTCTGTTGTCCTCTCAGCCTGGCTTTGAGTGAGAAAGATGAGAAGTGAGGAAGAGGATGGGGAACagggatgaggatgaggaacagggatgaggatgaggaatgGTCGGCCCTCCTGTCTACAGTGGTATTCCGACAAGAGCGAGAGCTGAGGGAGAGCTGAGTCAGTGTGTTCGTTTTAGATTTAGGGTTTTCTTTGTGTTCCTGCTCATGAATACGTCAGTGTGTtcaagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgtgaggAGGAGGCTGTGAGGTAGCTGCTCTCTGTTCAGAGGTGAGGTAGAGCCTGTCAGCACAGAGGCAGTTGTGGAGCCACAGCCAGAGGTGTGCCCGAACtgaggtacaaaaaaaataataattaaacaacaaTACCATAAAACAGCCAGTCCATCAAGCCGCTAGCCTGCCTGCTCTGTCTACACTcatcactgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtGTGTCTGAGGtttgtgtgtccgtgtgtgtgtgtgtgtgtgtgtgtgtgctcagtctGGGAGGAACATAATACTATTCAGTGCTATTCATTAGCCTGGTTACCATATGAGCCTGAATTTATTCCTGGGTTTGTGAGCGCGCCTCTCTTACCTTAGCCGTATTCAGAGTtaaaatgtgattcatttgttttacaCTGGAGCCATTTGCCTGCGTGTTCACGTCGCTTTCTAAAGTAACAAGGCAAGCAGGATGAGGTTCGGTAGTTCTGACGAGTTGTGCAGGTCAAAGTTAGCTtcgtcagctagctagcaacatGGATATTTCACAGTAGgttgttttatgttttactttACAACATATTAGGTGCAGTATGTACTGATCTGGCGATGCTGGATAGGTATCTGATTTTTTCGATTCGATCCACAGATTTTATGCCGTGCAACTTTTTGATCGTGCATGCAActagaaaataaaatttgtcTTTCAAACGTTTTTTGGCGCACAGATTTTACAGTGTGGCGAATGTGTGGTGAACTGGGAAAAAAGCCTTCAGATTCCCTGTGGCTGAGTTTTCaccaaaataagaaaagaaaaatctataaGCCacctataacatactttgaaaCATCTAGTTTAagaaaatctgaatatataaccaaaatgacatggaaatgtttttatttacagtttaactAACATAACTAGCTAAGTGTCTAAGTTATGTGACGATGTCACATGTTCATCACGTGCTCATTAAGGAGAGCTACCTGCTGTAATGAAATGAACATAAGTCGAACCAGTTTAGTTCGTAATCAGtctaaatgtctgtgatgctcctgcgCCACACTCGGAATGAAATCTACTTGTTTTTGAAAGTTGTGCAAAAGAGAAATCAGGAAATCAGTTTGCAGATCTATAACACTataaaaagtttataaaaattTCATCTCACTCCAAGAAATGTcatcttaccaagtgaaaatatctgatTTATAGTCAGATGTATGTATTATtacctattataagattacaataaaccaaattattaatataaagattattaaacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237612 lncRNA upstream 518790 22347890 ~ 22348118 (+) True G200807
TU237582 lncRNA upstream 624596 22124233 ~ 22242312 (+) True G200784
TU237575 lncRNA upstream 752086 22114406 ~ 22114822 (+) True G200779
TU237327 lncRNA upstream 840427 22013806 ~ 22026481 (+) True LOC113527202
TU237320 lncRNA upstream 867016 21999686 ~ 21999892 (+) True G200569
TU237911 lncRNA downstream 234446 23103284 ~ 23103499 (+) True G201093
TU237895 lncRNA downstream 235838 23104676 ~ 23105908 (+) True G201077
TU238015 lncRNA downstream 399789 23268627 ~ 23269419 (+) True G201186
TU238014 lncRNA downstream 399954 23268792 ~ 23269419 (+) False G201186
TU238025 lncRNA downstream 403736 23272574 ~ 23398660 (+) False polr2a
XM_026915340.2 mRNA upstream 13412 22849303 ~ 22853496 (+) True LOC113527478
XM_034309559.1 mRNA upstream 19342 22807179 ~ 22847566 (+) True pkd1b
XM_034309560.1 mRNA upstream 19342 22807179 ~ 22847566 (+) False pkd1b
XM_034309561.1 mRNA upstream 19342 22807179 ~ 22847566 (+) False pkd1b
XM_026915333.2 mRNA upstream 19343 22807179 ~ 22847565 (+) False pkd1b
XM_026915466.2 mRNA downstream 263645 23132483 ~ 23167487 (+) True wnt3
XM_034309362.1 mRNA downstream 263686 23132524 ~ 23167487 (+) False wnt3
XM_034309363.1 mRNA downstream 263691 23132529 ~ 23167487 (+) False wnt3
XM_026914971.2 mRNA downstream 370459 23239297 ~ 23265400 (+) True hdlbpb
XM_034309602.1 mRNA downstream 442422 23311260 ~ 23318154 (+) True LOC117595720
XR_003402874.2 other upstream 854604 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 863634 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 3300224 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 4054646 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU237980 other downstream 336828 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 455235 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 488673 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 1512949 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 1792387 24661225 ~ 24665525 (+) False LOC113527710

Expression Profile