RNA id: TU237895


Basic Information

Item Value
RNA id TU237895
length 1233
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G201077
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23104676 ~ 23105908 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAATtccacaggaagtgatgtataTTTCACAGCAATCATGGACGTTGTGCTTTGGGCCAGGCCGAGCgctttgtgtttaaaatagGACCATTATATCCATGATATATGTCAGAATGGAATGCTGCACTGGAGTCGTAAGCGTCCCACAGTCATAAAGGCACCAGTGTCTGGTTCAGatttcactcctgattctctcCAAAATCCACAAGGACATCAGGAAATGGAGaatccaccacacacacacacacacacccctctctctttccttccctcTCTGTGTAAATGAAACACAATTCCATGGAAATGGTCTGTGTGACATCAGTCTGGCTCTCACCTGCGCTGTTAATGTGAATAATCTtctgtgtatgtgcgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgaaAGATGTTAGAATACACAGTATAACTGAAGCAGTAAAAATCCCAATTGTTCTCCTGTAGCTTACATTctttaaaacatgataaatacaTCTACAAAAGTATATGAACATAACGCtccatttatttaacactcaGTTCCACAGGACCATAGCTGAGTGcgaaagtattcacccccaatAGTTtttgaatggggaaaaaatgaaaatgtatgcctattttataatttatctatatataaattataattccAGGAAGTTAACAAATTAAATGTGGgttgtaaaaagaaaattatcaCCAAAATCAGATAAAATACATATAGCCGATGTTGAGATAATCTAAGAGCTGTTCAGAGGATATGAAAGGGCACACACTCACCCATACTGGAGAGCTGAAGACTGAAAAGAAATATCAcgtggtctttttccagtcttcagctgtccagtgtgagtgagtctgtacccatgatagcctcagattcctattcgtggctgacaggagtgcaacctgatgtggtcttctgctgttgtagctcatccacctcaaggtctgatgttttgtgcatgctgagatgcttttctgctcatcatggttgtaaagagcgactatatgagttattatatgCTTCCTGGCAGCTGGAACCAATctagccattttcctctgacctcttttatcaacaaggagtttctacccacagaactgttttttttttcttcacaccaCACTGTATAAACTCTATAGATAGGATGCTCATGGGACTCACTTCAAATTGTTATGTTCTGCAAGTGCGGTGTGTATATAATTTGCAGATCCTAAATTCTGGCAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237911 lncRNA upstream 1177 23103284 ~ 23103499 (+) True G201093
TU237831 lncRNA upstream 235838 22866908 ~ 22868838 (+) True G201019
TU237612 lncRNA upstream 756558 22347890 ~ 22348118 (+) True G200807
TU237582 lncRNA upstream 862364 22124233 ~ 22242312 (+) True G200784
TU237575 lncRNA upstream 989854 22114406 ~ 22114822 (+) True G200779
TU238015 lncRNA downstream 162719 23268627 ~ 23269419 (+) True G201186
TU238014 lncRNA downstream 162884 23268792 ~ 23269419 (+) False G201186
TU238025 lncRNA downstream 166666 23272574 ~ 23398660 (+) False polr2a
TU238060 lncRNA downstream 206170 23312078 ~ 23313405 (+) False LOC117595720
TU238079 lncRNA downstream 269166 23375074 ~ 23380990 (+) True G201234
XM_026915340.2 mRNA upstream 251180 22849303 ~ 22853496 (+) True LOC113527478
XM_034309562.1 mRNA upstream 257111 22810078 ~ 22847565 (+) False pkd1b
XM_034309564.1 mRNA upstream 274817 22807179 ~ 22829859 (+) False pkd1b
XM_026915466.2 mRNA downstream 26575 23132483 ~ 23167487 (+) True wnt3
XM_034309362.1 mRNA downstream 26616 23132524 ~ 23167487 (+) False wnt3
XM_034309363.1 mRNA downstream 26621 23132529 ~ 23167487 (+) False wnt3
XM_026914971.2 mRNA downstream 133389 23239297 ~ 23265400 (+) True hdlbpb
XM_034309602.1 mRNA downstream 205352 23311260 ~ 23318154 (+) True LOC117595720
TU237829 other upstream 233392 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 1092372 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 1101402 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 3537992 19526642 ~ 19566684 (+) False LOC113527713
TU235479 other upstream 4293164 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU237980 other downstream 99758 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 218165 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 251603 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 1275879 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 1555317 24661225 ~ 24665525 (+) False LOC113527710

Expression Profile