RNA id: TU238079


Basic Information

Item Value
RNA id TU238079
length 5176
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G201234
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23375074 ~ 23380990 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGAGAGTTTATTCCGATCTCAATGAACAGGGTttgaaaaaacattaaaaacaacaacaacaacaaagaatgACGTAATCAGCTGCAATGACGCTCGGGAAAGTGGTCTAGTGCCCTGACGACTTGTAAAATGAtcattaataaatgctgtagagaTGATTTCACGAGTTAACAAACCAGTTCTGGAtatggtaaataaaaaaaagcaaatgctaATCAGGTCCTTTCCAGCAGGCTAAAATACTTTTAAGCATTTACTTTAAACAGACTACCACTTAAGCTGAGAGACGAGTATACACAAGTTACACAAGTTACCACACGCCCATGTAAAGCACCTAAACTCTCCCAACAAAACATGATCaggaactttttattttaacaccGTAGCTTACTTTACTTCACGAACTTACATGCACATGTGGTGTTAGAAAAATCTACAACAGACAGGTGAAGAGTTTTAGCAACATATTTGACCTCAAGATCTTAGTATCTTAGTAAGAATCAATATTTGGCTTACAGAAAAAGGTTTGTATTtgtgatgattatgatgaaaaggTTTTTGCCTTTAACATTTTGGGATCGAGGAGTGGGGATAATAAGTACCTGACCATTATGATTTCACAGTTAGCCACTTTTTCATAAACactcattaaaatgtatttgtctATTAGCTTCTATCCAGTTCTATACTCCAGAAGTTCTCATGAACTTCCTATCCTGCTGCGACGCTACAAAAACTTCACAACACGTTCCTCTGAACTCATCCTAAATCACACTACAGTGATCTCCGGTGCAACTGAAAACATTTAGCTGCGTTTAATCCGCTTCTGTTGTAAACATGCTACAGTACTAGCTCCGCTGCCAGTCTGAGCATGTTCCTCACTTGACGTCACTCCGCCAAAGCACTATATATAACTGCGACGTGATGAGTACTGACAGATTTTATAGCAAAGTCATACTCATATCTTTATAAAAACATTCAGGGATTTTATCTTTTTGTCTCCTTTTGTttcgtttttttcttttgttatatAAAAAGCACATGCGAAAACACTCCTGTACAAAGATTTCACAATAAATcctgtgtttttaatgtttgattAATCCTGCGATATATTTTTTTGGACTAGATAATAACGCTGGAAAGATTACAAACCGTAACGCCCCTAACGCGCCACACATACAAACTTCACACTCAAGAAACATCAGCGCTGAATATTAGCCTTCTACAGAATAATCAAGCACGCGTTCCCAATCTTACTCATGGAGAATCGTCAGTCCtggacatttttgtgttttctgttctccAACACGCCCAATTCAACTGAGAACGGGCTTGTAATTAGGCGATCACCTggctcaggtgtgttagagtatAGGAATCACTAAAACTAGCAGGACGctgggttctccaggaccagatGTGTCGTGACAGGACAGCATAGAGACATGGCCTTCTCTCTGGCATGTCAGACTTGAGCAAATTTATTTTGAAGTGTCGTGCTTTTCATAATAAAGAGAACTCATCTGTCTGGAaaccagaaaagaaaacaaaagaaagcaaaaaaacaggaagcagaAACGTGCCGAGTGGTGGGAGAATctaatagtgaaataaataaataaaaaaagacgaCTGTAAGCTAAGCCGTGAAGTGACGTAACGCAACATCGCTTTGCCACGGACGCAGCTAGCTAAGATTTAGAGCATGTTAATTATATCGCTATATTATGAAAAGATCCTGTGTCATAAGTCTGTAGACCTGAAGATCCTAACCCTGGTCCTGAAGAATCTGCTGTGCTGCATATTGTAGAGTTTTCCCTCCTCCatcacacctgattcaactaatcagctaattaaaaaCTTTTCTTCAGgggaatcaggtgtgttagacgCAGGAAAGACACTAAAACGTGCAGGACAGcaggttctccaggaccagggtcaGGAACCTGTGCTGTAGATGACTGACATTCAGAGCGCTGACCTTTTCATGAGTATAAAGTttgggtgtgtggtgtgtaggaCTGTTACGGTTTGAAATTTCCAGAACCAAAGATATTAGGACCTGCAATATAACAAGTCTGTACTGTTAAAAGTCCATTTCGGAGATCTTCCTGCTCTGAGAAACCTGATGAACCCACGAAGTTGGGTTGGTGTGCGAGCAGGAGAAACCTGGCAGACTTTAAGGAGCGCTGCGCCAAGAGGGAGAAGAAAAGGAGACGACTCATTGCTGCCAAATTAGAGACTTTGGTGACTTAAGACCCCTTTCGTGACAAATCTAGCGACTTTCAGAGCAGATGTTAGTGACTGAACTCCATACGgttctccagctcacatcacagctgctgataTACGAGTTGAAGGAGCAGGTTCGCTCGACTCACCGTCAGTGTGTGAAGCCTGACTGTTGCGcttgtgaccaatcactgatcaccacagtttcccaacaaccaatcactgatcaccattattcccaacaaccaatcactgatcaccacagtttcccgacgaccaatcactgatcaccattattcccaacaaccaatcactgatcaccacagtttcccgacgaccaatcactaatcaccacagtttcccgacgaccaatcactgatcaccacagtttcccgacgaccaatcactgatcaccacagtttcccgacgaccaatcactaatcaccacagtttcccgacgaccaatcactgataacCACAGttcccgacgaccaatcactggtcACCGCTATTTGTTTGTCCCACTCTCACACTTCTAAGCTCTCTTCTTGgagatatttacaaaaaataaaattaattaactgtTTCCTTCACAACTACTCGCCTTTCATGATCATTTCTTTGTGTCTGCGTTCCTGAGACAAAGTATATTAAACACGTAAAAGTTTATAGAGCGAACAGATGATCAAATTCTCATCTATTATTTCCTTCGAGTCTGATAAAAGtattgcattttgaaaaatcttCCTTCAGCTACCAATGATCACGAAGAATAAATTTAACATGCAAATGAACGTGTCCGTGACGTCACCCGGCGACTTCTAGCCCCCTTTCTGAGCCtgctttagctactttcccctgaaaagagctGCTGGCAACACTGAGGAGACTTCTGTAACCTGACTTACTCCTAAAGCAGATAATCTGATCCTGCCTCCGTGGCACCACACGaattccttctcttttttccccctactaTTCAATCTGGATCATTTAACTAGCGGTCTGAAATGACTTCTTAGAcgctgtgaaaagaaaaaaaataataacaataaggaAGAAGACATGTTTAGCTGTGGCAAATGACTCAGcctgacttctctctctctctcttccttacAAAACAACAACCCTGTAACAGAACAGACTCCATTTTTATTACACAGACGCCTCCGCCATACTGACACACCAACACCAGCCCTGACCAAGCACTAGAGcggtttgattttaaaaaataatatagctAAGAACATAATTTCCACCAAATATACAGCTAcatttgtgtatatgtaaaaaaatatcactCAGCGACGGAAAACACACCCAAGTTACATATAACAAAGCTTTTACTGTTAGCTGGCTAAGAtggctggctagctagctaaataaacCAACCTGCTgtctaatatttaataattatccattatttaaaactaaagCGACATACTAGCTCAGAATAGCTTCAAAATCGTACAGAAAATCGTTTTAATGTCGTGTACAGCGACAAAAAGACAAATGCTAGACCAAGAAcattatgctagctagcttagcatcGCGCGCGTGCAAGACCAACTTGTCGACGATTCCCCTTtcctttttaacaaataaataaatatataaataatattatatatataaatataactaatAATCTATATTATACACCCTTTTCTATAGGAATAAGATAGCATTGATGTATATTTCGGTGGTATTTCCTCAAAAACAAATCACCATGGCAACTAATCTTAGCTAAATATCCAACGTACAACTTAGCCAGCacttattattttctttattttgttaaatactTAAGTATCGACAATAAGTGTTAAGACGGCTGGCTAAtctaatgtaatattaatgttattttttaaaagacaaaagaaaaaaacaacaacaaacaaaaaaataaaattccaccTCACCACCTAAAAGGcgatttataaaataaatcgtCTGCTCTACATTTGggaaatcaaattaaatttataatctagattttttttttaatttatcgtCGATCTAAAGACtcagaaattaatttttattttctcactttGTTGTTGTGGAGGAGACAGAACTATGCTAAGCTAAGAAGCTAATAACCGCGGCGGCCATATTGTGCTTTAACGTTCTCCTTCGAACGAAACCGAACAAATATaacatattatacattttattttttttttaaaaaaaggagctAAATCAACATGGTTGCTCACTTTAGCTTTAATAACatactgtaatttaaataacacGGAGGTAAATACTAACCTTCACACTTTATAACGTTAATAATAGTTACctaacatacatttttttttgtttcagacGACAAAAATTGAACCGTTCTCCATTACAGTAAACTGAAACTCATTATTGTCTAAACAgctcattattaaatatttcagaaataatatttttaaaaatccatctctctctttatacTGTTATCTAACCTTATCCGCTGGAGCCTTCCGACTAAAACGCGGCCTACAGcttaaaatctcaaaaaaataCGGATCAAAACTCAAAATACGTACCACCCTTTTAAGCAATCGTCTCACAAAGACTAAACGATAAATTCTGATCttttgtgtataaaaaaagattaaaaaatatagttGGTACAAAGCTCCAGGCTTTCCGGGGGCTTTCCAACTCCGCATACCGAAATTCAGTGTCAGTTGTCCGGCCATTGCTTTAACTCGAGTCCGAGGCTTCTTGCAATTTCCCATAAAATAGTAGCAAATGTTAAAAATTGCTACGAAAAATAACGGTTATATTTAAAGGCGTGCTAAAGAacattgttaaaataattttggaCCATTTATCATAAAAgctaagtaaaatatatatgtttgaaTCTTCGGTGGTTGAGGTAGGCCTTTCGCGCGAGCTTCTTTTCCAACACTCGTAGCTGGTCCAGGGCGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238060 lncRNA upstream 61669 23312078 ~ 23313405 (+) False LOC117595720
TU238015 lncRNA upstream 105655 23268627 ~ 23269419 (+) True G201186
TU238014 lncRNA upstream 105655 23268792 ~ 23269419 (+) False G201186
TU237895 lncRNA upstream 269166 23104676 ~ 23105908 (+) True G201077
TU237911 lncRNA upstream 271575 23103284 ~ 23103499 (+) True G201093
TU238092 lncRNA downstream 79012 23460002 ~ 23460455 (+) True G201240
TU238120 lncRNA downstream 261416 23642406 ~ 23688417 (+) False afap1
TU238141 lncRNA downstream 319729 23700719 ~ 23729010 (+) True G201281
TU238144 lncRNA downstream 338057 23719047 ~ 23722939 (+) True G201284
TU238157 lncRNA downstream 357367 23738357 ~ 23740340 (+) True G201297
XM_034309049.1 mRNA upstream 53846 23315593 ~ 23321228 (+) True LOC113527736
XM_026915816.2 mRNA upstream 53846 23315596 ~ 23321228 (+) False LOC113527736
XM_034309602.1 mRNA upstream 56920 23311260 ~ 23318154 (+) True LOC117595720
XM_026914971.2 mRNA upstream 109674 23239297 ~ 23265400 (+) True hdlbpb
XM_026915466.2 mRNA upstream 207587 23132483 ~ 23167487 (+) True wnt3
XM_034309273.1 mRNA downstream 754 23381744 ~ 23398663 (+) True polr2a
XM_026914512.2 mRNA downstream 21193 23402183 ~ 23420064 (+) True capgb
XM_026914799.2 mRNA downstream 45885 23426875 ~ 23436725 (+) False si:dkey-219e21.2
XM_026914798.2 mRNA downstream 45885 23426875 ~ 23436724 (+) True si:dkey-219e21.2
XM_026915767.2 mRNA downstream 66153 23447143 ~ 23459505 (+) True mfsd8
TU238054 other upstream 45503 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 168695 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 503790 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 1362770 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 1371800 22002824 ~ 22003274 (+) True G200571
TU238950 other downstream 1000797 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 1280235 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1948219 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 2116725 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 2117190 25498180 ~ 25502628 (+) True G202374

Expression Profile