RNA id: TU238120


Basic Information

Item Value
RNA id TU238120
length 1540
lncRNA type sense_over
GC content 0.37
exon number 2
gene id afap1
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23604837 ~ 23688417 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttcctataacagcagatcctgaagtgttttattcctcttacaccacagcagtggCAGTGCTAACATCGTTTGTTTAGAAGAACGACATGTCAAacatttttatccgtttatagttacatttactgctgtggaaacaagttcgttcctgttctcacttactttacagcagctataaacagtcattctctcaccagcctctcttttctttaaataaagcttgtcatgttactgagaaaccatgaagcgtaaactcctctgtcctgaagatgtcggaaaacttaaagttacagctttatctctgactgttacaaggtgctgacactggagactccttccatagacgttaaataaacatcttcttacagaaaacttcaccatatcaatgattataattttcctttgttaaatctgtttttttaattattaggcttagattatatggagcttccgccatacaagttcctgtgtaagttgttactatggaaacgataatgtactagaacgagcgcattaatataaaccaccagagctgctgttatggaaaatgaatcaacaccttctgaccaatcagaatccagacttcaacagcactgtggtttaatgTCTAATGTGTGACCTTCTATAGTGAAGTgttaaacatacacatacacaagtgggggcggagctaatttctggTCCgcatgaaatggaaaaaaataaaactttaatcacGTGGTAATATTACAGTTTCTtgacctatttttttttttttttaagtatataaTTATACCACATTTAAAGACACtttgaaaaatgacaaactgcacctttaaactctataaaagcacaacatgtGATCCGTTGTTATAAAAATTTTCCTGTTTCgtctccatgtttgtttttctcacgtTGTTGCCATGGAGAGTAGCGTTAAGATGGCTGTCCTCTGTCCTGCCCGTATTGCTGTATGCTCTTAAAGCAGGACGTACAGTATTTTGCCGTATGATGGTATCAGAACTGTATTAGTTTTGGGTTCACTGGTGCTTTAGAGTCCTCGCTTTTGCTCTTAAATCCGGTGAGATTAACAGAGCAACACTTGGTGCTTCATATAGAAATAAGAAAGAAGCGATTTTTAGAGACTACTGCCAGCGTATTCACATTCGAggcacatttattattattttccatacACAGCTGGTTTCTTGCgctttgcattttttatttaacaaacatacattttaatcTGTCAAAGCATATGTAAATatactctttttttaattgttttgttttttttttattttcactgatgtCAGTCCCATGAGTCTGCAGTCCACTTGTGTGAGGGGAAATCTAGGAATCTGAGTAATATTCAAGAAATGTTTCTTTCAGCCTTACAGACGAGTAAACATGTTCTATCTTTCCGAAATGTCTTTGCTGTCCCTCGATACGAGTCCagcgtctctctgtctctccctcgcACGCATTAAGAGACCAACGATGTCATAAATGTGAACTGTAATAAGTATTGTTTCAGTGGGAAGGGTCAGAGGTCAAGGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238092 lncRNA upstream 181951 23460002 ~ 23460455 (+) True G201240
TU238025 lncRNA upstream 243746 23272574 ~ 23398660 (+) False polr2a
TU238079 lncRNA upstream 261416 23375074 ~ 23380990 (+) True G201234
TU238060 lncRNA upstream 329001 23312078 ~ 23313405 (+) False LOC117595720
TU238015 lncRNA upstream 372987 23268627 ~ 23269419 (+) True G201186
TU238141 lncRNA downstream 12302 23700719 ~ 23729010 (+) True G201281
TU238144 lncRNA downstream 30630 23719047 ~ 23722939 (+) True G201284
TU238157 lncRNA downstream 49940 23738357 ~ 23740340 (+) True G201297
TU238518 lncRNA downstream 74648 23763065 ~ 23763266 (+) True G201600
TU238523 lncRNA downstream 86964 23775381 ~ 23860976 (+) True G201604
XM_034309028.1 mRNA upstream 42274 23541024 ~ 23600132 (+) True ablim2
XM_034309029.1 mRNA upstream 42274 23541024 ~ 23600132 (+) False ablim2
XM_034309031.1 mRNA upstream 42275 23541025 ~ 23600131 (+) False ablim2
XM_034309032.1 mRNA upstream 42275 23541025 ~ 23600131 (+) False ablim2
XM_034309027.1 mRNA upstream 42275 23551577 ~ 23600131 (+) False ablim2
XM_034309133.1 mRNA downstream 359146 24047563 ~ 24064984 (+) False uros
XM_034309132.1 mRNA downstream 362577 24050994 ~ 24064984 (+) False uros
XM_034309130.1 mRNA downstream 362578 24050995 ~ 24064984 (+) True uros
XM_034309131.1 mRNA downstream 362843 24051260 ~ 24064984 (+) False uros
XM_034309134.1 mRNA downstream 362867 24051284 ~ 24064984 (+) False uros
TU238026 other upstream 243746 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 312835 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 436027 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 771122 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 1630102 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 693370 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 972808 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1640792 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 1809298 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 1809763 25498180 ~ 25502628 (+) True G202374

Expression Profile