RNA id: TU238144


Basic Information

Item Value
RNA id TU238144
length 3869
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G201284
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23719047 ~ 23722939 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGGGGGAAAAGCAATAGAAAATCAGAGAATAAATGAGATATTATGCATTTGGTCATAGGATAAACATCCAGTCTCTgaagaaacaaaagaataaaatatataacttaACGATTTAAGAAAAATTAGGCTATCATCGCCagttcattgttgttgttttttttttgttttttttgttttttttacagtccaTAATAATTTAAAGATGTTCTGAAGTATGAACCCAACAATTGCCTTTCGTCCGTCATCATCTTTTGAAAGCAAATATTATCCAGGGGAATAATTAATCTGAACCCAAAACAAATTACAGTACAAAAACTGGCAAGTAAAAGGTTCAGGTTTAAAAATTATCCATTCTGGATGATGGATGTCTTTGCTTGCAACATCTTCCTTTCACCTTGGTCCATAAAGTTCATTGTAGATTCAAAGCATCGCAGAATTCCCTCCTGAATAAAAAGGGAGGATGTAGGCTTTCAAATAGTCTTCTGACTCAGAGGTGAGACACTCTTACCAGCAGCATCAGTGAATGGACTGGaatgtttaattttacagaaaaaaaggcaTGCATGTGTTCGACTGGATTGTGAGTTTATGAACAGCAGTGTCTGTAGAGTTCCAGGCTGAGAAACGACAGTTTGAACAAACTTGATCACCGGATGTGAGACGAAGTGCATGCAGCTTTTCAAAATAAATCTCTTTGGCCTTTCACACCATGAGACTGGTGAGGTCTGTCAAACATAAGGCCAGAaggcatgaagaaaaaaagaattacatGCAACAGTACCATAGGATATACATGTACACCTTTCcgatatacatactgtacaacCTTCATCTTATACTGCTGTCTTTCATAAAGTGGCCCTGCATCTGTAATGTTTGCATACTTTGCATAAATATGTAAGGAGATTATTCCCATTCAAGGCAGTACTACATGATTTTAGTAAACAACTTCTTTGCTATAACCGATAAatcacagcacaaacacacacaaaaggttTATACTTTCATTCAGTCGGAAACTGAAATAACACTGAAGTGGTGCTTCTTTTCAGAAAACATAGATGTCTGTTTCTTACATCTTGTAAACATCAATTTGAGCCTTAATTCTCACCAGCTGCAGGTTTTGTATAATGTGGGCCAAGATTTCTGCTTCGAAGCAGGAACATGTGAGAAcacaacacatttattacaatataatactgataataaGGTAAACGTCCCTTGAGGTCATGACCCTCACTGTTTGATAAAAAGAAACATCGCCAAACATTGAAGCTCTGGAAGTTTCAGAGACTTTGTTTTCTGCACTGTGGCAACTTTTTATGTATGGAAATGGACTTGGGACTTGACTTTATCTGTCTTTACATGGGAAGTGGCTTGGAGCTAGTCTGTCTTGACTTGAGACTTGACTTGAGACTTGACTTGAGACTTGTATGTATTGACTTGGAACTTGACTTGAGAATCGGCTGTCTTTATTCTGGACTTTACGTGCAACTTGTACTTCAGACTTGTCTGAATTTACTTGGGACTTGGCTTGAGACTTGTCTTTCTTTATTCTGCACTTGAACTTGAGGCTTGTCATGTCTTTACTCGGGACTTGAACTTGAGACTTGTCTGTCTTTGCTTGGGACCTGACTTGGGGCGTGACTTAAGCGCTTACTTGGAATTTGAGATTTGTCTGTCTTGACTTGAGACTTGTCCATCTTTACTTGGGATGTGACATGAGACTTAGCTGTCTTACTTGGGACTTGACTCTGTAACTTGACTCTGTCTGTACTCGGGACGCGCTTATCTGTCTTTAATTAGGATATGACTTCCTTCTTTACTCAGGACTTGACTTCAGACTTGTCCATCTTTACTTGAGACTTGACTTGAGACTTGTTCCTCTTTACTTGGGACTTGACTTGAGACTTGTCGGCCTTTACTCGACTTGGTGCTTGTACATCTTTACTCTGGATTTGACTTGAGACTTGTCAAAACTTGCTTGCCTGTCTTTAATTAGGAAATGACTTGAGACTTCCATCTTTACTTAGGACTTGATTTGGGAATTGTCCATCTTTCCTTGTGACTTGACTCTGGAATTGTCTGTCTTTACTCAGGAGACTGTCTTTACTATTACTGTCTTTAATTGGGATATGACTTCCATCTGTACTCAGGACTTGACTTGAGACTTGCACTTCAGACATGTCAGTCTTTACTTGGGACTTGACGCTTGTCTTCCTTTACTTGGTACTTGACTTTGGAATTGTATGTCTTTACTGGGGAGGTGACTTCTTGTTTGTCTGTATTTAATTAGGATATGACTTGTGATTTCCATCTTCATTCAGGACTTGACTTGAGACTTATCTATCTTTACTCTGAATTTGACGTCAGACATGAACGTCTTTACTCTGGGCTTGTGAATTGTCTGTCTTTAATTGGTACATGACTTCAGACCCATAGTTCAAATTCGTCGGTCTTGACCCAGGACTTGAGTATCTAGAGTTGAGACTCACTTACTTGAAAAATCATGTGTTGTTCCCACCTTGCTCATTTAGACTACTGATTTTAAGATTTAACACAAAGTCGTTTTCGTCTTTGTCAGCTAGCTGCTAGAATGGGAGGACAAAGTGTCAGTAAGAGTAATAAAATTTGGCATGGTTGGCACATGTgaatgatgctgtgtgtgtctgcaggaaATCAGGCTCACATTGCATTAAAGCACCACTACATTAAACAGTTGATGCTGACAGAACTTTCCCTGGTGTTTGGCAGATGATGGATCAATTATCTGTTAAAGAGACAAACCAGTATTATAATTGCAGCCACATGTTATAATTACAGCCttatgtttgagtgtgtgtgcgcgcgtgcatGGACATGTGTCTTACTGAGtcatatcacagcaatttaacaCCATGTGTTTTGTACATTGGTTCTTCACGGTAAGCAGACAAGTCTAAGGCGGTTTGTCTTTTCTTAGAGGCACTTAAGGTGCTTTTGATCTGCATCCTGGAGTGTCTGAGAGCCTGGTTGGCTCTTAAATAGGAATTGCATATAAATCCAAATGTGACCTGGATGCAGAATGGCACAGTGTTGTTTAGCATTAGTTAGCAAGCATTGACTGTACTGAATGAGTGATTTGTATTGCATAAGCAAAACTACATGCTCAGTTATTGCTAGTTATGTTGCTACCTATTGGAACAGTACTTTACATGCCAAAGTAGGTTACTACGTTGTTAtttacacatattattattattaggcacTTATTATTAAATGCTTAGTCTAAATTTTAAAGCATATCTGGCTAACTAAACTGTTGTGCCCTactaaagcagaagaaaaatgtctaaCATTTACTTGATGTCCAGCCCGAAAGAGCAGTAGCTTGGTCATTTGATATAGAGTTACTTCATGGCAGTTATTTCCATTCTGTTgaataacacactctgaaaAGTAAAACACTAAATCTtgacaaaatatgaaaacacaAATACTGCTTTTGCTCTAGCAGGGCAGCGCTAGCTAGCCAAGTCCAGTCTCCCAGTTCACAGACCAAGCAATCCTGACATACAACCTACTAGTTTAGCAAACTTAACACTTAGGCCTTGATGCATGACTTTGTGTCCAGAAGTTCACATACTTGTCTGCGTATCTTATGTTCGTCAGAGTGATTAAAAGCAACAGCCATTAGATGCACTAGATCCAAGCTGAAGTGTAAAATGTTTCGTTATTTCATGCACGGCAATGTTAAACGCTGACGAGCTCTGAACTGCATCTCAATATTAAAACTCTGACCATACATACAAAAGTATTTTCTAATCTATAAAATCCAGAAGAATGGTATGCAAGACAGAACACTGGGCAGGTTTGAAGGCTATata

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238120 lncRNA upstream 30630 23642406 ~ 23688417 (+) False afap1
TU238092 lncRNA upstream 258592 23460002 ~ 23460455 (+) True G201240
TU238025 lncRNA upstream 320387 23272574 ~ 23398660 (+) False polr2a
TU238157 lncRNA downstream 15418 23738357 ~ 23740340 (+) True G201297
TU238518 lncRNA downstream 40126 23763065 ~ 23763266 (+) True G201600
TU238523 lncRNA downstream 52442 23775381 ~ 23860976 (+) True G201604
TU238693 lncRNA downstream 315999 24038938 ~ 24043243 (+) True G201753
TU238756 lncRNA downstream 433567 24156506 ~ 24156965 (+) True G201793
XM_034309456.1 mRNA upstream 31946 23604837 ~ 23687101 (+) False afap1
XM_026915393.2 mRNA upstream 31946 23632653 ~ 23687101 (+) True afap1
XM_026915394.2 mRNA upstream 31946 23632653 ~ 23687101 (+) False afap1
XM_026915396.2 mRNA upstream 31947 23632655 ~ 23687100 (+) False afap1
XM_026915397.2 mRNA upstream 31948 23632655 ~ 23687099 (+) False afap1
XM_034309133.1 mRNA downstream 324624 24047563 ~ 24064984 (+) False uros
XM_034309132.1 mRNA downstream 328055 24050994 ~ 24064984 (+) False uros
XM_034309130.1 mRNA downstream 328056 24050995 ~ 24064984 (+) True uros
XM_034309131.1 mRNA downstream 328321 24051260 ~ 24064984 (+) False uros
XM_034309134.1 mRNA downstream 328345 24051284 ~ 24064984 (+) False uros
TU238026 other upstream 320387 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 389476 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 512668 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 847763 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 1706743 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 658848 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 938286 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1606270 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 1774776 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 1775241 25498180 ~ 25502628 (+) True G202374

Expression Profile