RNA id: TU238693


Basic Information

Item Value
RNA id TU238693
length 4146
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G201753
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24038938 ~ 24043243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagtggtgattaatgttaattaacatGGAGGAAGATCGCTTTTTTAGCAGTCCTGTTACAAAGAAAAGGTTGAAAATAGTAAATCTTACACACAGTTTTCATTGTCCATGTCTACAAATAGACATATGGAACATCTTAAACAAACTTAAAGCATgtcattacttttattattattattattttgaatagtTATAATGGTAGTGCAGTAATGTGTACCTTATAAAGAACAACAATTTATTATCATTGCTGTTAGGTaagttgttgttcttctttcggctgctcccgttaggggtcgccacagcggatcactggtccgtatgtgatttggcacagtttttacgccagatgcctttcctgatgcaaccctcttCAAGTTTGtacaggcttgggactggcactacAACCTCTCagtaaatgtgtatagagacatggcggagaaaaataaagcttggaaggaagtagaaAAGATCGTTAAAGATCGTTAGACAAACTGCAAGCGACACGAGCGACTTCTTGCCtgttagtgtgaatgtagggtttTCTGGCTGTACACAGGGACAGACAGTTCACTCATACAGGGATTATTAGCTGTGTATATTAATTCAGTTTAGTGCTCGTCTTTTGAGTCAGAATTgattattaaaacaattaatatttattttaaaacaattaatagcatttatttatagaaaaaaactTAATAATCTTCAGCTCCTTTAGACAGCTGTTAGAAAATAGTTTCAATGTGAGGACAATTAAGGCGCATTCAGATGGATTTATAAAGGTAGTGCAGTGTTTATTCTTAAATGTAAACCATAAAAAAGGTATAAATGCTGTTTTAGGCATCTTTAGACAGCCATTCAGAATTTACATTAATCGACACATTTGTcagattacatttacattaaaatgcatgcgcgcgcgcacacacacacacacacacacacacacacacacacacacacatatagcgtgtgttatttgtatagcgcttctAACAATGGATAgtgtcacaaagtagctttacagagatatataaattcaggatataaatgttaaatttatatgtttatccctaatgagcgagccagaggtgacggtggtgaagaaaaactccctgagatgatatgaggaagaaaccttgagaggagaCAGACTCAACAGGGAATCCATTATCATCTGgatgacaccggatagtgcgattataaataatttccccTATATACTGACGGATGGatgagagatggatggatggatggatggattgacaGACACATGGATAGGCAGATGGTTGggggacagacagatggaaggatggatggatgctgttggatggatggacagaaggATGGGTATACTGTTGGATTCATGGAtcgaaagatggatggatggatggatggaaaagtggatggatggttggatgggtATACTGTTagattaatggatggatggatggatggatggatgtgtatACTGTTGGATtcatggatggacggatggatggatgggtataCTGTTAGATTTGTGGaaggatgaatagatggatggatggatggatggatggatgtttacACTGTTAGATTTGTGGaaggatgaatagatggatgaatggatggatggatgtttacACTGTTAGATTTGTGGaaggatgaatagatggatgaatggatggatgtttaTACTGTTGGATTCaagggtggatggatggatgaatagatggatggacagtCATAGAAATACACTGagaatatataaatgaatgcaggctgataaataaaattctatttTCGGTTATTGTTGGTTATTGGACGTGTTGGTGATAAAATGGGTTAAATCTTGTTTTTCTATCTACAGTGTAAGAGTTAAAGAGTTAATTTCAGACCTCGAGTTGGACAGTGCGCTTCTCTGGAGCTGATTTGTGCTGCAGTACAGTCCAGTAGCAATAAACCGCTGGTGTTGAATCCACACGTACAGGACACTGTGTGGGAAACACTGGCTTAAATACTATATCAGagctttataataatatatctcGACTGATGTGAGAGTCAGACGTTTGTCTTTACTGACCACAGTGagttaacattaaaaataaatgagataGAATCGGATAGACATGGAGAAGACAGACGCAGTGTTTGAGTTCCACCACCAGGGGGCAGTGTCTGACTGAAAggacacactacagtacactacacctCTTACTAAGTTCAAGCATTTTATACAGAATCACTTTTATAGTCATTTTTATAAGCAATCGTAGATTACTAATTAGAATTTTGCTGGTTCGCAGTGTTTCTAAGCGTCAAATCAATAAACGTAAACACAAAGTCCAATAGAAACTCATACATACTCATGTGGCAGAGAATAAATTTACATCTTTTTAGATGATGCAAGATTTTAGATTGTTAATTAAAGTAGAGAAGCTTATTCAagctttattacattttcagttGAGGGCTAATTATCCTTTGGAAGGccagtgatgatgtcactgctgTTGTCAGCGAGCTAAAATATGGATATTCTCAAATGTTTCATTCTCTAATGattaaatctaatttatttaaaaaaggagaCGTGACCTTCAGACAAATTCAATAAAAGACTGTGcgaaaactgtgtgtgttctccatgtcagattaaacgataaagatcctctaacgatagacctgtgatgaAGGAAAATTACTACGTTCTGCGTAGTTTACGTCGTCAGTCAGTGAGATCAGGAATTCAGCgtaaacacacatttttcataGGAAATAAGGCAAATTTTTCTGTCCACTAGTGTGTTTAGTTTACGATTACTACGTATTACTACGTGTTTGtagatgtggtgtgtgttttgcgTCATCCTGTGCCGTGCTCCTATTTGTTGGATTTTCGACGAGCGTcgtagcagcgctcacactctgggattttcataaaaaaagatttcttaCACTTTGGTTTCAGTGACGCTAAAACGCCCGGTGAGAATATCACTTCACGTGACCACCGATCTCAACTCACAAACAAAGAATTATGTTAACAAGGTGCGATTTTTGTCTGTGGCAGCAGTTTAAATCTGGCTTAACTGAACACTTTGTATGTTtcctgacacacatacacaccagagACCCTGTAATTTAAACcctggacagacagacagttagttagagagacagacagaaagacagcacCCACTCCCATCCAACACACACTATTCAGCTTTAACTCTTCTCTCCCCAGCCGTGACCTTCTTCCCTCCTTTCACGTAGGACTGGTAGAAGAAGGAGGTGAAGAGCAGCAGATAGCTGAGGTACATGAGCGAGCCCCAGGTGATGTTGCTGTCCGTGGATCTGCACATCGTGTCGTTCTGCCAGCGGTACACGAGCGCCAGCACCATCAGGCCCAGAGCCATCTGTAGAGTCTGGAGGGCGGTGATGATCATGGCGCAGGGCCGAGGGAGGTGCAGGCCGGCCGCTTTCGCCGCGTAGTAGCTGTACATGAGCGAGTGCACGGTGTAGTTCATGGTGACGAACCAGCAGCCTCCTGCAACTCGCTCTCTGTAGGTGTACCACGAGTACAGCAGCACCGTGATGTGGTGGTACCAGTGCAGGAAGATCAGACGCTGCTTACGCAGAACAATGAACACTGTGTCTCCTGGGGATGGGGGGACATGACACAGAACCAAAAATCTTGTTTATTGCATGCAGAATATAAATTAgatcattttgtattttaaaaaatattgtttggttttttttctaatgaccCCAATGACTATTAATattatacactgctcaaaaaatgaaaagaacactttgaaaacacatccgatctcaatggggaaaaatatcatgctggagatctgtactgatatggactgggtaatgtgttaggaacgaaaggatgccacatcgtttgatggaaatgaaaatgatcaacctagagggctgaattcaaagaaattctgaaaatcaaagtgaaaaaaatgatgcagcaggctgggccattttgctgaaatttcattgcagcaactcagaATGGTACTCAGcagtttgtatggcccccacgtgcttgtatgcaCGCCTGACAACATCGGGGAATGAtcctaatgagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238523 lncRNA upstream 177962 23775381 ~ 23860976 (+) True G201604
TU238518 lncRNA upstream 275672 23763065 ~ 23763266 (+) True G201600
TU238157 lncRNA upstream 298598 23738357 ~ 23740340 (+) True G201297
TU238141 lncRNA upstream 309928 23700719 ~ 23729010 (+) True G201281
TU238144 lncRNA upstream 315999 23719047 ~ 23722939 (+) True G201284
TU238756 lncRNA downstream 113263 24156506 ~ 24156965 (+) True G201793
TU238739 lncRNA downstream 160619 24203862 ~ 24236550 (+) False G201782
TU238779 lncRNA downstream 181635 24224878 ~ 24225626 (+) True G201814
TU238732 lncRNA downstream 192260 24235503 ~ 24236550 (+) False G201782
TU238736 lncRNA downstream 192260 24235503 ~ 24236779 (+) True G201782
XM_034309456.1 mRNA upstream 351837 23604837 ~ 23687101 (+) False afap1
XM_026915393.2 mRNA upstream 351837 23632653 ~ 23687101 (+) True afap1
XM_026915394.2 mRNA upstream 351837 23632653 ~ 23687101 (+) False afap1
XM_026915396.2 mRNA upstream 351838 23632655 ~ 23687100 (+) False afap1
XM_026915397.2 mRNA upstream 351839 23632655 ~ 23687099 (+) False afap1
XM_034309133.1 mRNA downstream 4320 24047563 ~ 24064984 (+) False uros
XM_034309132.1 mRNA downstream 7751 24050994 ~ 24064984 (+) False uros
XM_034309130.1 mRNA downstream 7752 24050995 ~ 24064984 (+) True uros
XM_034309131.1 mRNA downstream 8017 24051260 ~ 24064984 (+) False uros
XM_034309134.1 mRNA downstream 8041 24051284 ~ 24064984 (+) False uros
TU238026 other upstream 640278 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 709367 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 832559 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 1167654 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 2026634 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 338544 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 617982 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1285966 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 1454472 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 1454937 25498180 ~ 25502628 (+) True G202374

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU259456 False 3487 lncRNA 0.43 3 NC_053130.1 1466670 ~ 1470470 (-)