RNA id: XM_034309455.1


Basic Information

Item Value
RNA id XM_034309455.1
length 2165
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC113527444
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24455659 ~ 24506076 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCGGTTATCAGCGGAGGGAAGTCGCGTGAGGgctgctgtgtgtttaaaaagcCGCGCACGCGAGCGCACCGTGCCGATGGGCGCGGAGCGGCGGAGACGAGCGCGTGACCACCGGAAAGCGCCTGGAAGAAGGATTCGTTAGAGGAGTAGAGGTGTTATAGGATGTGTAACTTCACCGGAACCGGAGTGTGGATGTCGCCTTTCACCGGTATGAGGGACCACTGAGTCACAAACCCCGGGACTTGGGACGCACTCGGTCAGTGGGaagttttccttttctttaatACCGGCTCCGGTTTGGACCCTGAAACACTTTCAGCTCACGGCCGTCCTGTTATTCCTGAGATGATGTATGAGAGCCGGTGCTCGGAGCGTCACTCATTCCTCATGGATACGGCAGCAGTTTCACATCACCTCAtcttcctccctctcctcctcttcctctctcgcctgtgtatgtgtgtgtgagctggagCGCGGCCGTCAtggctcacacacaccacagctaCAGTCTCCTCAGCACAGTGGCTGAGGAGCATCACAAGAGGATGCTACCACTGCAgCAGGACCCTGCGAGTGTGTTGTCTCTCCTGGACATCCACAGagaaacactgcacacactcagtCCGCTCTCTTGCCTCAGACGCTCCAAAATCTACAGCTTCATCTTCGGCCTTCTCGTCCTCTTCCTCATCATGGCCTCGTACGTGCTGAGCAGCGAGAGGAAAGCCTTTCTCATCACATCATCTCCGTATCACACAATAAAACATAGAACAATGCTCTTTAACCTCTCCTCCACTAAAGACTCCGCCCACATCGGTCAGGTGGTGCAGCGGATCCTGTCTAACCTGGAGTTTAAACCCAGGAAGTTACCGGATCTGGGAATGCTGGTCCATAGCGAGCCACATATGTTCTCGGTGATTCCCCGCCACTTCCTGCCAGATGCGAAGAATCCGTGCTGGTATAAGCAGCTGTCAGGGAACGCCAGCGTGAATCCGTACCAGAGGAACCTGTACGCTCTGTACTCGCGCCAGTCCCGCGTCGCCTTCCACATCCTGAGGAGAAGCTTCTGGAAACATCTGTTACGGCGAGAGGGGAAGTTGTACCGGATACGCTGCCTGCCCTACTTCTACATCATCGGGCAGCCCAAGTGCGGCACCACGGACCTGTACGAGCGGCTCCGGCTGCACCCGGGCATCCGGGTCAGCGCACTTAAAGAACCACACTGGTGGACTCGCAAGAGATTCGGTATAATCCGTCCCAGTGATGGCCTCCACGCTCGCTATCCGGTGGAGGATTATCTGGATCTGTTTGATCTTCCAGCACATCACATTCAGTATCAGATGTTGGCCAACCGGACCGCAGGAGTCCATCATGCTGATATTATCATCGGTGAGGCCAGCGCGTCCACCATGTGGGACAACAACGCTTGGTCCTATCTCTATGGCAACACCTCAGAGGCGGAGCCTCCCTTCCTCATCCAGGACTTTATCCACGCCCTTCAGCCTGAGGCACGCTTCATTGCCATCCTGAGGGACCCTGTcgaaaggttatACTCGGACTATCTGTACTTTGGCATGGCCAATAAATCGGTGGAGGATTTCCATGAGAAGGTTTGGGAGTCGCTGCAGCTGTTTGACGCGTGTCTGCAGGAGTTCAGCCTCAGAGCATGTGTGTACAACAGCACACTCAACAACGCCATGCCTCTCCTCTCCATCACAGGGCCTCCTGACGGAGCTGCGCTGTGAGGCCCTCTCTATTTAGCCAATATCATGTTAACATTCCTCTATACATTATTTAatctaaatgttttaaacacttTGTGGACATCTTAATCAGTCTGGTAATTAATTTTTgtcccaaaaatgaaaaataaacttcattttaaaatgtgaaagtcTCTATAGCAAATTGCAGTTTCTGTTTTCGGCATTTTGACGTTTTTGAGTGATTTCTGCAGAGTTATAAATTGTAGAAGTAATACGGTTCTCTAGTTATTACACAGGACGTGCATCTATTCCATAGACTAAGATTACATCTGTAATCTAAGCTCAAAGTGAAATGTAGGAAATTTATATGGGAAAAGTTTAATAGATAAATGACActatatatgtttaaataaataataataatctgttttcTGTTGGTTAGATGTTTTCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238813 lncRNA upstream 116929 24338134 ~ 24338730 (+) True G201844
TU238812 lncRNA upstream 117591 24337024 ~ 24338068 (+) True G201843
TU238736 lncRNA upstream 218880 24235503 ~ 24236779 (+) True G201782
TU238732 lncRNA upstream 219109 24235503 ~ 24236550 (+) False G201782
TU238779 lncRNA upstream 230033 24224878 ~ 24225626 (+) True G201814
TU238986 lncRNA downstream 1372 24505312 ~ 24506076 (+) False LOC113527444
TU239131 lncRNA downstream 171742 24675682 ~ 24676158 (+) True G202115
XR_003402885.2 lncRNA downstream 285380 24789320 ~ 24790813 (+) False LOC113527734
TU239184 lncRNA downstream 285402 24789342 ~ 24791405 (+) True LOC113527734
XR_004579280.1 lncRNA downstream 285958 24789898 ~ 24790813 (+) False LOC113527734
XM_026915299.2 mRNA upstream 57212 24380301 ~ 24398447 (+) True oat
XM_026915619.2 mRNA upstream 132045 24285081 ~ 24323614 (+) True fam53b
XM_026914779.2 mRNA upstream 181836 24267278 ~ 24273823 (+) True hpdl
XM_034309374.1 mRNA upstream 220575 24206733 ~ 24235084 (+) False ctbp2l
XM_026914653.2 mRNA downstream 35350 24539290 ~ 24589833 (+) True cpxm2
XM_026915789.2 mRNA downstream 157104 24661044 ~ 24666608 (+) True LOC113527710
XM_026915788.2 mRNA downstream 165278 24669218 ~ 24674576 (+) True LOC113527709
XM_034309056.1 mRNA downstream 173244 24677184 ~ 24685154 (+) True bub3
XM_026915787.2 mRNA downstream 173244 24677184 ~ 24682775 (+) False bub3
TU238950 other upstream 73372 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1056999 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1126088 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1249280 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 1584375 22798181 ~ 22871284 (+) True mrpl27
TU239119 other downstream 157285 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 825269 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 993775 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 994240 25498180 ~ 25502628 (+) True G202374

Expression Profile