Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU239184 |
| length | 887 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 4 |
| gene id | LOC113527734 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 24789320 ~ 24791405 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko05323 | Rheumatoid arthritis |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU239131 | lncRNA | upstream | 113184 | 24675682 ~ 24676158 (+) | True | G202115 |
| TU238986 | lncRNA | upstream | 283266 | 24505312 ~ 24506076 (+) | False | LOC113527444 |
| TU239003 | lncRNA | upstream | 306900 | 24480257 ~ 24482442 (+) | True | G202007 |
| TU238813 | lncRNA | upstream | 450612 | 24338134 ~ 24338730 (+) | True | G201844 |
| TU238812 | lncRNA | upstream | 451274 | 24337024 ~ 24338068 (+) | True | G201843 |
| XR_004579278.1 | lncRNA | downstream | 25076 | 24816481 ~ 24818352 (+) | True | LOC117598647 |
| TU239191 | lncRNA | downstream | 25136 | 24816541 ~ 24818306 (+) | False | LOC117598647 |
| TU239202 | lncRNA | downstream | 54428 | 24845833 ~ 24891292 (+) | True | G202172 |
| TU239203 | lncRNA | downstream | 60882 | 24852287 ~ 24853885 (+) | True | G202173 |
| XR_004579132.1 | lncRNA | downstream | 81549 | 24872954 ~ 24894054 (+) | True | LOC117598464 |
| XM_034309056.1 | mRNA | upstream | 104188 | 24677184 ~ 24685154 (+) | True | bub3 |
| XM_026915787.2 | mRNA | upstream | 106567 | 24677184 ~ 24682775 (+) | False | bub3 |
| XM_026915788.2 | mRNA | upstream | 114766 | 24669218 ~ 24674576 (+) | True | LOC113527709 |
| XM_026915789.2 | mRNA | upstream | 122734 | 24661044 ~ 24666608 (+) | True | LOC113527710 |
| XM_026914653.2 | mRNA | upstream | 199509 | 24539290 ~ 24589833 (+) | True | cpxm2 |
| XM_026915509.2 | mRNA | downstream | 70011 | 24861416 ~ 24864681 (+) | True | LOC113527566 |
| XM_026914853.2 | mRNA | downstream | 207545 | 24998950 ~ 25003270 (+) | True | lrit1b |
| XM_026915511.2 | mRNA | downstream | 216443 | 25007848 ~ 25013291 (+) | True | lrit2 |
| XM_026915692.2 | mRNA | downstream | 272195 | 25063600 ~ 25079829 (+) | True | LOC113527669 |
| XM_034309493.1 | mRNA | downstream | 277151 | 25068556 ~ 25079829 (+) | False | LOC113527669 |
| TU239119 | other | upstream | 123817 | 24661225 ~ 24665525 (+) | False | LOC113527710 |
| TU238950 | other | upstream | 407055 | 24381787 ~ 24382287 (+) | True | G201962 |
| TU238026 | other | upstream | 1390682 | 23357511 ~ 23398660 (+) | False | polr2a |
| TU238054 | other | upstream | 1459771 | 23324073 ~ 23329571 (+) | True | G201214 |
| TU237980 | other | upstream | 1582963 | 23205666 ~ 23206379 (+) | True | G201154 |
| TU239415 | other | downstream | 537804 | 25329209 ~ 25354290 (+) | False | dupd1 |
| TU239521 | other | downstream | 706310 | 25497715 ~ 25498919 (+) | True | G202397 |
| TU239496 | other | downstream | 706775 | 25498180 ~ 25502628 (+) | True | G202374 |
