Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579278.1 |
| length | 375 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC117598647 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 24816481 ~ 24818352 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU239184 | lncRNA | upstream | 25076 | 24789342 ~ 24791405 (+) | True | LOC113527734 |
| XR_003402885.2 | lncRNA | upstream | 25668 | 24789320 ~ 24790813 (+) | False | LOC113527734 |
| XR_004579280.1 | lncRNA | upstream | 25668 | 24789898 ~ 24790813 (+) | False | LOC113527734 |
| TU239131 | lncRNA | upstream | 140323 | 24675682 ~ 24676158 (+) | True | G202115 |
| TU238986 | lncRNA | upstream | 310405 | 24505312 ~ 24506076 (+) | False | LOC113527444 |
| TU239202 | lncRNA | downstream | 27481 | 24845833 ~ 24891292 (+) | True | G202172 |
| TU239203 | lncRNA | downstream | 33935 | 24852287 ~ 24853885 (+) | True | G202173 |
| XR_004579132.1 | lncRNA | downstream | 54602 | 24872954 ~ 24894054 (+) | True | LOC117598464 |
| TU239219 | lncRNA | downstream | 117932 | 24936284 ~ 24936877 (+) | True | G202182 |
| TU239263 | lncRNA | downstream | 153268 | 24971620 ~ 24973240 (+) | True | G202215 |
| XM_034309056.1 | mRNA | upstream | 131327 | 24677184 ~ 24685154 (+) | True | bub3 |
| XM_026915787.2 | mRNA | upstream | 133706 | 24677184 ~ 24682775 (+) | False | bub3 |
| XM_026915788.2 | mRNA | upstream | 141905 | 24669218 ~ 24674576 (+) | True | LOC113527709 |
| XM_026915789.2 | mRNA | upstream | 149873 | 24661044 ~ 24666608 (+) | True | LOC113527710 |
| XM_026914653.2 | mRNA | upstream | 226648 | 24539290 ~ 24589833 (+) | True | cpxm2 |
| XM_026915509.2 | mRNA | downstream | 43064 | 24861416 ~ 24864681 (+) | True | LOC113527566 |
| XM_026914853.2 | mRNA | downstream | 180598 | 24998950 ~ 25003270 (+) | True | lrit1b |
| XM_026915511.2 | mRNA | downstream | 189496 | 25007848 ~ 25013291 (+) | True | lrit2 |
| XM_026915692.2 | mRNA | downstream | 245248 | 25063600 ~ 25079829 (+) | True | LOC113527669 |
| XM_034309493.1 | mRNA | downstream | 250204 | 25068556 ~ 25079829 (+) | False | LOC113527669 |
| TU239119 | other | upstream | 150956 | 24661225 ~ 24665525 (+) | False | LOC113527710 |
| TU238950 | other | upstream | 434194 | 24381787 ~ 24382287 (+) | True | G201962 |
| TU238026 | other | upstream | 1417821 | 23357511 ~ 23398660 (+) | False | polr2a |
| TU238054 | other | upstream | 1486910 | 23324073 ~ 23329571 (+) | True | G201214 |
| TU237980 | other | upstream | 1610102 | 23205666 ~ 23206379 (+) | True | G201154 |
| TU239415 | other | downstream | 510857 | 25329209 ~ 25354290 (+) | False | dupd1 |
| TU239521 | other | downstream | 679363 | 25497715 ~ 25498919 (+) | True | G202397 |
| TU239496 | other | downstream | 679828 | 25498180 ~ 25502628 (+) | True | G202374 |
