RNA id: TU239203


Basic Information

Item Value
RNA id TU239203
length 1329
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G202173
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24852287 ~ 24853885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGAAGGTGTAGTGACGGTGTTCAGAGGGAGcaggaggtgtttattattagatattagatattaaagtatttatgatgatgatgagactgcagtagtgtgtgtagaggatgTAGTAATGAATGTTGTTATGATGGAGATGAAGGTGTAGTGACGGTGTTCAGAGGGAGCAGGAGgtgtttattatattagatattagatattaaagtatttatgatgatgatgagactgcagtagtgtgtgtagaggatgtagtaatgaatgttattatgatgttgatgatgaaggtgtAGTGACGGAGCTCAGAGGGAGCAGGAGgtgtttattatattagatattagtTATTAGATAGGTGATGAAGGTGTAGTTAGCGAGTGAGAGACCTCTGAGGAGAAGTACTTGGCCATGCAGGCCTCTTTAATGAAAGGTCGTCCCGCCTCCCTCAGCCTCGCTGCGTTGTAGGTCAGCAGCCTCGCTGCCTCCAGCTGAGTCGCCACGTGAGAAATCTGATGCTGCATCGCCTGAAAATCACACAACACCATCACATGCTGTGCTCGTTACCCACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCACAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCAACCACACACCACCTTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAACACCGTCACGTTTAACACGCTCTCAACCACACAACACCTTCACGTTTAACACGCTCTCAACCACACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579278.1 lncRNA upstream 33935 24816481 ~ 24818352 (+) True LOC117598647
TU239191 lncRNA upstream 33981 24816541 ~ 24818306 (+) False LOC117598647
TU239184 lncRNA upstream 60882 24789342 ~ 24791405 (+) True LOC113527734
XR_003402885.2 lncRNA upstream 61474 24789320 ~ 24790813 (+) False LOC113527734
XR_004579280.1 lncRNA upstream 61474 24789898 ~ 24790813 (+) False LOC113527734
XR_004579132.1 lncRNA downstream 19069 24872954 ~ 24894054 (+) True LOC117598464
TU239219 lncRNA downstream 82399 24936284 ~ 24936877 (+) True G202182
TU239263 lncRNA downstream 117735 24971620 ~ 24973240 (+) True G202215
TU239266 lncRNA downstream 120019 24973904 ~ 25062169 (+) True G202218
TU239334 lncRNA downstream 233030 25086915 ~ 25088713 (+) True G202273
XM_034309056.1 mRNA upstream 167133 24677184 ~ 24685154 (+) True bub3
XM_026915787.2 mRNA upstream 169512 24677184 ~ 24682775 (+) False bub3
XM_026915788.2 mRNA upstream 177711 24669218 ~ 24674576 (+) True LOC113527709
XM_026915789.2 mRNA upstream 185679 24661044 ~ 24666608 (+) True LOC113527710
XM_026914653.2 mRNA upstream 262454 24539290 ~ 24589833 (+) True cpxm2
XM_026915509.2 mRNA downstream 7531 24861416 ~ 24864681 (+) True LOC113527566
XM_026914853.2 mRNA downstream 145065 24998950 ~ 25003270 (+) True lrit1b
XM_026915511.2 mRNA downstream 153963 25007848 ~ 25013291 (+) True lrit2
XM_026915692.2 mRNA downstream 209715 25063600 ~ 25079829 (+) True LOC113527669
XM_034309493.1 mRNA downstream 214671 25068556 ~ 25079829 (+) False LOC113527669
TU239119 other upstream 186762 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 470000 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1453627 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1522716 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1645908 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 475324 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 643830 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 644295 25498180 ~ 25502628 (+) True G202374

Expression Profile