RNA id: TU239263


Basic Information

Item Value
RNA id TU239263
length 1621
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G202215
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24971620 ~ 24973240 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTACTCTGGTCCTGATGACTCCTCCTCCGAGAATGATCTTGAGCCAAATCCGTCCTCGATGGGCAGAGCACTGGTTGTGGtgttgatgttggtgtttgtggtgGTGCTCAGTCCTTTCCTTTTCAGGCTGCGTTCCTCCATCTTGATAGTGTCATAGAGTCCTGTGGGACCCTCCTCCAGCAGCACGTTCCTCTCGGAGTAAGACGGCTTCATCTGGCAGACGTGTCGCAGCACGAGCAGAGCGGGAGCGTACAGCATGTTGACGAGGCCCATCCCCAAATTTAGTTGGACAAACCCCAGGTTGTGGACGATCTGTCCGGCCACGATGGGCCCCATGGCGTAGGCCACGGAGTACGAGATGTCTGCAATGGCGTACACACTGCCGTAAACAGACACATGACGAACGTCGACGAGGAAGGCCAGCGTAGGCAATAGCGCCGTGTCGACGAGTGCGATCCCGAAGCAGATACCACACAGAGGCACCATGAGCTGTCCGAAGTTCTTGCAAGCAGGCACGGTGCATGAGCTCGCGCCAATGATCACCATGCCCAGAGCGCCGTAAAACCACTGCAGGTGCGGGTACTTGGCCGCCAGTTTGACCGTCACGTACACGCCAAGAACATGCGGGAAGAACGAGGGCAGCCATGTCAGGCCCATCTCCCACTTGGTGGCGTGCATCGTGGTCTCCATCCAGTTGGCCACCGTGGGTTCGAGGAAAGCCAGCGGCACATTGCAGACTGTAAGCGCCCCCGCTACCACGGCGATATACGGGTCCACCATGAGCCTGTGGATGGGAGTGCCGATGGGCATGTTCTCACGTGACCGGTCTGAGAAGGGCTTGATCACAGTGAGCAGCAGGAAACCGTCGGCCAGGCACACACACGCCAACACGACGAACGGTACACGCTTACCGGCGAACTCGTAGAGCACTCCGCCAAACGGTGGTGCCACAAGGCTGCCAAATGATATGAACGCCAGTGCGATACCGAGCGCACGACTGCGTTCCGCCTCCTCCGTGTACTTGTCGGCGATCATTGCGATGCCTGATGTGTCTGCGAACGCCGAACCAAGACCCTGTAGACTGCGTGCCACAAACAACGTGGCATAGTTCTCAGCAAACGCGAACACGCTGGTGGACAAGAACATGACCGTCAGCCCAATCAGGAGTGGGATGTCGTAACCCACCCGGTCAATAAACGTCCCCGATAAAGGGTTCACAAGGAGCTGGACGATGGCCTTGGAGGCGAACAGAACTCCTATCTTTACGTCCAGGTTCTCCTTAGTGCTGTCGGTGGAGATGTTATTGTGTGTCTTTGCTTCATTTTCGCTCTCCAGGTCGGCCAGGTAGTCTGGGATAATTGGCACGATCACCATGTACAGCATGTTGTCTAGGAGCAGCGCCACGCACACGATCACTAGGATAATCCTCCGCTGGCGCTCGGGATCGTGCACCGCCCCGCCGAGCTGCTTCGTCCTCTCGGAAAGTTTCTGAGCAGCTGATCTGGCCAGACCGAGAGACCCTCCGGACTCCTCCATGCTTCAAAGTAAAGGACAATCTCTCCTCCTGCTTTagctgctgtttatttatttatttttcctcccCGAAGCGCAAAGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239219 lncRNA upstream 34743 24936284 ~ 24936877 (+) True G202182
XR_004579132.1 lncRNA upstream 77566 24872954 ~ 24894054 (+) True LOC117598464
TU239202 lncRNA upstream 80328 24845833 ~ 24891292 (+) True G202172
TU239203 lncRNA upstream 117735 24852287 ~ 24853885 (+) True G202173
XR_004579278.1 lncRNA upstream 153268 24816481 ~ 24818352 (+) True LOC117598647
TU239266 lncRNA downstream 664 24973904 ~ 25062169 (+) True G202218
TU239334 lncRNA downstream 113675 25086915 ~ 25088713 (+) True G202273
TU239347 lncRNA downstream 137048 25110288 ~ 25111484 (+) True G202286
XR_004579129.1 lncRNA downstream 161211 25134451 ~ 25135165 (+) True LOC113527241
TU239355 lncRNA downstream 213542 25186782 ~ 25189327 (+) False G202290
XM_026915509.2 mRNA upstream 106939 24861416 ~ 24864681 (+) True LOC113527566
XM_034309056.1 mRNA upstream 286466 24677184 ~ 24685154 (+) True bub3
XM_026915787.2 mRNA upstream 288845 24677184 ~ 24682775 (+) False bub3
XM_026915788.2 mRNA upstream 297044 24669218 ~ 24674576 (+) True LOC113527709
XM_026915789.2 mRNA upstream 305012 24661044 ~ 24666608 (+) True LOC113527710
XM_026914853.2 mRNA downstream 25710 24998950 ~ 25003270 (+) True lrit1b
XM_026915511.2 mRNA downstream 34608 25007848 ~ 25013291 (+) True lrit2
XM_026915692.2 mRNA downstream 90360 25063600 ~ 25079829 (+) True LOC113527669
XM_034309493.1 mRNA downstream 95316 25068556 ~ 25079829 (+) False LOC113527669
XM_034309604.1 mRNA downstream 173429 25146669 ~ 25153897 (+) True LOC117598682
TU239119 other upstream 306095 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 589333 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1572960 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1642049 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1765241 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 355969 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 524475 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 524940 25498180 ~ 25502628 (+) True G202374

Expression Profile