RNA id: TU239356


Basic Information

Item Value
RNA id TU239356
length 1506
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G202290
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25186782 ~ 25189327 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTTCACAGTAACATCCCTCATCCCAATTATagagacattttaaatgttcattaataaacaaagtaCTCTACTCAACATATATTCCGATATTTGCACTTTATCTTGGGAAttctgggtgtgaggcaggaatccACCCTGAACAGGGCACCAGTTCATTCACACCTGAGGCAGTTTAGCATAGcatttttgggaggaaaccagagaacccagaggaaacccacatggacgtCAGTctgttaatcatttaattttttttatggaaatataGGTGAGGTACTTTGTGGACTGACtcagctgttactatttttacaCAGCtagaatgaaattatttttgtgCACTTAATGCAGTTAACACGCTACAGTCTGCTAGTCTGGTTCTCAGGTTGATTATTTCTCCCTCAATAAGCCAGCCAATAAGCGGTCTTTGAACCATAATAAATGCACAGAAATATTGgataaaatgctattttaagtaattaatattttatgtactCACTACAAGAAGGAATTTTTATCTACATTCTTCACACAATcctaaagaaaagaaataatccCGGGTCAGACGAAGCTACTTTTAGAACCAAGAgctcaattattattattattatttggttcATATCagctaaaaattaaaattgaaacaGCCCATATTTCACCAAGCCaagttttttaaaacatgagaGCATTAGTAGCATAATGTAATGATTTGCCTTTTTTCCTAAAggtatttaaaactttaaacacACCATTTGAGATAGAgcttttaaaagttaaaagtatgtttttgatatttagccaaataaaaaagtacaatcCTCAATATAATGCAGTTAACAAAAGGTAACCCATTTCTTAACACCTCTTTTTTTTGCTAGAAAAATTGTTTTCAAAGACCAGATTACTGAAgtaatttatgttaatattgaGAACAATTGCACTTATGTTAATAAGCAACACAGATTATGGATTATGATGACAGACAAAAACAGCAACATGGCCTGAGCAGAAGTTGAGTTTGATTGAGATTGATTATTTCTGCTTCCCTGCTTTGTTTCTTCACCAGAATTCCACATCTCCTTCTACCCGGTATGATCTTTCTTCTGTGATGCTGAGGCTCCAGTCCATTCTCAGTAAGAACGTAAATAACTTTCTTGCGCTCCATGTGGAATTTCctCATGATTAGGCGTGGTCATAATTTGCCTTAAACTATTGCCTCCTGGAAGGGCGACTTGATTTGATGATCTGTATGGCATCACCTGGTTGTTTGAACTGCTTTGAGAGCAAGCGCATCTACAGCACTGATGGTGACTCATGGTCTCCTCTTCTTCTGGAAATGGAATTGTAACACttttagttatatatatatttaaaacaataactctgcttcatcacacacacacacacacacacacacaggggtttTCTGCATGTAGCTAAAGTAATACAGGTCAAATCCATCAGTTAATGTTTTTAGCATTATTTAcctaaatattcaaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579129.1 lncRNA upstream 51617 25134451 ~ 25135165 (+) True LOC113527241
TU239347 lncRNA upstream 75298 25110288 ~ 25111484 (+) True G202286
TU239334 lncRNA upstream 98069 25086915 ~ 25088713 (+) True G202273
TU239266 lncRNA upstream 124613 24973904 ~ 25062169 (+) True G202218
TU239263 lncRNA upstream 213542 24971620 ~ 24973240 (+) True G202215
TU239382 lncRNA downstream 10383 25199710 ~ 25199947 (+) True G202310
TU239457 lncRNA downstream 101414 25290741 ~ 25290965 (+) True G202342
TU239421 lncRNA downstream 154879 25344206 ~ 25428112 (+) False dupd1
TU239433 lncRNA downstream 168609 25357936 ~ 25428009 (+) False dupd1
TU239454 lncRNA downstream 180003 25369330 ~ 25369655 (+) True G202339
XM_034309567.1 mRNA upstream 23911 25154992 ~ 25162871 (+) True LOC113527238
XM_034309604.1 mRNA upstream 32885 25146669 ~ 25153897 (+) True LOC117598682
XM_026915692.2 mRNA upstream 106953 25063600 ~ 25079829 (+) True LOC113527669
XM_034309493.1 mRNA upstream 106953 25068556 ~ 25079829 (+) False LOC113527669
XM_026915511.2 mRNA upstream 173491 25007848 ~ 25013291 (+) True lrit2
XM_034309510.1 mRNA downstream 71413 25260740 ~ 25270653 (+) True LOC113527655
XM_026915668.2 mRNA downstream 71413 25260740 ~ 25270653 (+) False LOC113527655
XM_034309367.1 mRNA downstream 193538 25382865 ~ 25386388 (+) True LOC117598570
XM_034309370.1 mRNA downstream 197508 25386835 ~ 25389881 (+) True LOC113524867
XM_034309368.1 mRNA downstream 201370 25390697 ~ 25394302 (+) True LOC117598571
TU239119 other upstream 521257 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 804495 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1788122 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1857211 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1980403 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 139882 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 308388 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 308853 25498180 ~ 25502628 (+) True G202374

Expression Profile