RNA id: TU239421


Basic Information

Item Value
RNA id TU239421
length 1325
lncRNA type read_through
GC content 0.39
exon number 3
gene id dupd1
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25329209 ~ 25428112 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacgcacacacacacacacacacacacacacacacaccacggttaccATAGTTACAGTAAGTAGTATGCATTTTGGGACACAGCCATGTAGACACACTAGTTTGCTATTTTAACAATCGGTTTGGGACACAGACATTAAAATCTTATCCCTTACTGAGAACATTcatgatattgtgtgtgtgttttttatatttgcaatatattatataacgaTATTAAAccaataatacaatatatttcaataactaacacaatattatatcatcatgaacaataatatcaaataatatCGTTGCTCGATTCTTTCTGGAAATATATTTCTCAGGACAAATTTGCAGCGGCATCGTAAGTCGAAAAACAACACGACGACTCTTAAAGCAACGTTTAAAAGTACAGTCTTTGTAATGTTTCGAGgaaaagtgggcggagctaagcAGATTCGTTTCagctgggggcggagctagaaacgaagaaaaaatgtaaacagaagcctgaaatgaaAAAGCTAGCTTTTCAGAGATTCGCtgcgtgaaaaaaaaaagttttatctCAATATCTTTgaaatattgaattattttactttgaataaatgtttaaatgttacaaactgcaactttaaatatagtttaaaaaaaaaaaaaaaaaaaaaaaaaagggagagacGCTGCCAAGCTCCTAGTAAACGTAGTGctttttaaattcaatattGCGATAATATCGTAAGAAAACGTAATTAAATCATCGTAATAACGCTTTTATGGATGTTTATATCAGCacgttttgtgttttttggcacaaacttgacaaaaaaaacatcctgatgATCTTCACAACATTCAGACACATTAGAAAATTCAATAACAGGTCCATCATtgaaaaaagtaagaaaaaaatcagcgtTAAaggatttaaatataaaaacatacagtcGAGATCTCAGtgaaaaactgcaattttattacaaatgataGAAAAGGAAGTGAAAGAGGAACCGTCGCTCATCAGATGGGTTTGGACCTGAGGgggactgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcctcctcCTCACTGGTACCAGGGGGTCTTTCGGACCCAGCGCAGCGTGAAGCCGGCGTCCGTGCGGATCTTGATGGACGCTGCCTCGGCCTCGCGCACCGTCTCCTTCACCGACTGCATCAGATTCTGAGCGTTGTGGACCAACATCTCCgtcgCTGCTCAGACTCCTCCTCGCTGATGTTGGTACGTCCCAACATGGTGGCCTTCACTGTGGAGAGAATCTTCAGCTGAGTGCTGATGGTGGGGATGCgctcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239457 lncRNA upstream 53241 25290741 ~ 25290965 (+) True G202342
TU239382 lncRNA upstream 144259 25199710 ~ 25199947 (+) True G202310
TU239355 lncRNA upstream 154879 25186782 ~ 25189327 (+) False G202290
TU239356 lncRNA upstream 154879 25186782 ~ 25189327 (+) True G202290
XR_004579129.1 lncRNA upstream 209041 25134451 ~ 25135165 (+) True LOC113527241
TU239450 lncRNA downstream 10781 25438893 ~ 25442225 (+) True G202336
TU239508 lncRNA downstream 35694 25463806 ~ 25464167 (+) True G202386
TU239525 lncRNA downstream 75032 25503144 ~ 25513154 (+) True G202400
TU239527 lncRNA downstream 77243 25505355 ~ 25565927 (+) True G202401
TU239529 lncRNA downstream 81168 25509280 ~ 25509506 (+) True G202403
XM_034309510.1 mRNA upstream 73553 25260740 ~ 25270653 (+) True LOC113527655
XM_026915668.2 mRNA upstream 73553 25260740 ~ 25270653 (+) False LOC113527655
XM_034309567.1 mRNA upstream 181335 25154992 ~ 25162871 (+) True LOC113527238
XM_034309604.1 mRNA upstream 190309 25146669 ~ 25153897 (+) True LOC117598682
XM_034309493.1 mRNA upstream 264377 25068556 ~ 25079829 (+) False LOC113527669
XM_034309478.1 mRNA downstream 281781 25709893 ~ 25745120 (+) True polr3a
XM_034309479.1 mRNA downstream 281900 25710012 ~ 25745076 (+) False polr3a
XM_034309535.1 mRNA downstream 345402 25773514 ~ 25791680 (+) True tbata
XM_026911246.2 mRNA downstream 375677 25803789 ~ 25818928 (+) True star2
XM_034309498.1 mRNA downstream 541857 25969969 ~ 25973840 (+) True ndr2
TU239119 other upstream 678681 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 961919 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1945546 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 2014635 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 2137827 23205666 ~ 23206379 (+) True G201154
TU239521 other downstream 69603 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 70068 25498180 ~ 25502628 (+) True G202374

Expression Profile