RNA id: XM_034309206.1


Basic Information

Item Value
RNA id XM_034309206.1
length 2598
RNA type mRNA
GC content 0.44
exon number 4
gene id dupd1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25329209 ~ 25428112 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacacacacacacacgtgttcttGTCTACAGCTTTAAGAACTGCGTAGAGACAAGACGAAACTGAAAGCTTCCAGAGAAATCGGTGATGTAATCCAGATGACAAATGGCGTCTCATGGATTGAAGTCTGGTCTGAAGGCTGATGTTCCTGAGGAAAATCAAGAATACGTGACACCCAGTAACTACGAGCTGGGGAAGCTGTTGGCGCGCAGCACTGTAGTGTACACACACGTCAACGAAGTGTGGCCCAACATCTTTATAGGAGATGAgcaGACAGCACGGAACCGTTATAGCTTACAAAAACTGGGTGTGACTCACGTTCTGAATGCTGCAGAAGGCGAGAGGAACAGTGTATGTACTGGAGCTGGTTACTATAGCAACATGGACATAGAGTACTATGGCATCGAGGCAGAAGACATTCCTTCATTCAACATCAGTGTGCACTTCTTCACTATGGCTGAGTATATGAGACGTGTCCTGAGTAATGCACAGAACAAGCTGCTAGTACACTGTGTAATGGGACGCAGTCGCTCGGCTACACTGGTCCTCGCCTACCTGATGATTGAGGAAAAGATGACGCTGGTGGAGGCCATCGAGCAGGTGAAGCGCCACAGACAGATCATCCCTAACTGGGGCTTCCTGAAGCAGCTGAGGGAGCTCGATGCCTTCCTTCTGGAGCAGaggagtgaacacacacacacacagactgcagaCGGTACTGAGAGGACCAAACAATAACACCAACAATAAAGAATTCCTGTCAGATGAATTCCTGTCAGTTCGTTACGAGTGCAATTCgctttaaatcaatattttatcatttactgACATtgcagctagctagttaacgtTTCCCATGTATGTCCATGTATCTGTGCTAGAATGTACACCGAGTTGCACGTTTATTCAGTCATTTAAGTCTTGTACCTACATTAATGGTCCTCCCTTTTCACGGATGGAGCAACAGATGCACTACAAAGTGACCTGTATGGTAGGTGTAAATTTTTACGTagataaatatttctttattgaatacttatttcattaaataataatttaataatttactcACACTATACTCACCCTACACACTTTATACTCCACCTActcacactatactcacactacacacactgtactcagCCTACCCTCATACTACACACTTTATACCCCACATAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTGTACTCAGCCTACCCTCATACTAGCCACACTACACtcaccctacacacactgtactcagCCTACCCTCATACTACACACTTTATACCCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCAGCCTACCCTCATACTAGCCACACTACACtcaccctacacacactgtactcgGGCTACCCTCAtactacacactttacactccaCCTAGTCACACTATACACAGcctacacacatactacacattTCATACTCTACCTAGCCACACTATACACAGcctacacacatactacacattTCATACTCTACCTAGCCACACTATACTCAGCCTACACTAATACTACTCACCATACACACTTTATATTCCACTTCctcacactatactcacactaCCCTCATACTACACACTTTATACTCCACCTAGCCACACTATACTCAGCCTACACCAACCCTGCTCACCCTACACTTTATACTCCACATAGCCACACTATACTCAGCCTACACACTTTATACTCCACCTAGTCATCCTACTCATACTACACTTTATACTCCAACTAGTCACACTATACTCACCCTACATTCATACTACTCAACACTACAGACATTATAGTCCACCTActcacactatactcacactaCAGACATTATACTCCACCTAGTCACACTACTAACACTACTGACACTGTACTCCACCTAGTCATCCTACTCATACTACACACTTTATACTCCAACTAGTCACACTATACTCACCCTACATTCATACTACTCAAACTACAGACATTATACTCCACCTACTCACACTATACTCCACCTAGTCACACTACTCTCCCTAGGAGTGGTATTCTGGTCAGTGTGGCTCTAACACTCACTAAAACACAGATCTTACATGTTACATGGTAATGAGCTGATACACtgaatgaggtgtgtgtttagGCCAAAATACTTCAATGTGCAATACAGAAGGAATgttcagcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcgaatGCAGAAGTGACACAGGAATAATAATGAC

Function

GO: NA

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239454 lncRNA upstream 30865 25369330 ~ 25369655 (+) True G202339
TU239457 lncRNA upstream 109555 25290741 ~ 25290965 (+) True G202342
TU239382 lncRNA upstream 200573 25199710 ~ 25199947 (+) True G202310
TU239355 lncRNA upstream 211193 25186782 ~ 25189327 (+) False G202290
TU239450 lncRNA downstream 27634 25438893 ~ 25442225 (+) True G202336
TU239508 lncRNA downstream 52547 25463806 ~ 25464167 (+) True G202386
TU239525 lncRNA downstream 91885 25503144 ~ 25513154 (+) True G202400
TU239527 lncRNA downstream 94096 25505355 ~ 25565927 (+) True G202401
TU239529 lncRNA downstream 98021 25509280 ~ 25509506 (+) True G202403
XM_034309369.1 mRNA upstream 2503 25394338 ~ 25398017 (+) True LOC117598572
XM_034309368.1 mRNA upstream 6218 25390697 ~ 25394302 (+) True LOC117598571
XM_034309370.1 mRNA upstream 10639 25386835 ~ 25389881 (+) True LOC113524867
XM_034309367.1 mRNA upstream 14132 25382865 ~ 25386388 (+) True LOC117598570
XM_034309510.1 mRNA upstream 129867 25260740 ~ 25270653 (+) True LOC113527655
XM_034309478.1 mRNA downstream 298634 25709893 ~ 25745120 (+) True polr3a
XM_034309479.1 mRNA downstream 298753 25710012 ~ 25745076 (+) False polr3a
XM_034309535.1 mRNA downstream 362255 25773514 ~ 25791680 (+) True tbata
XM_026911246.2 mRNA downstream 392530 25803789 ~ 25818928 (+) True star2
XM_034309498.1 mRNA downstream 558710 25969969 ~ 25973840 (+) True ndr2
TU239415 other upstream 46230 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 734995 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1018233 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 2001860 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 2070949 23324073 ~ 23329571 (+) True G201214
TU239521 other downstream 86456 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 86921 25498180 ~ 25502628 (+) True G202374

Expression Profile