RNA id: TU239450


Basic Information

Item Value
RNA id TU239450
length 333
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G202336
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25438893 ~ 25442225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggCTGTGCATTGGGGTCCTTGAGCCAGTTCTTTGCCTGGGCCATTTTAGAGTCGATGAGAGCCAGAGCTCGCTTCATCGTCTCAGTGTCCTTcttgctgGCCCAGGCGTCTTCATCCCAGGACGTGAGCTGGAGCACTCGGATGATCTCGTTGATCTCAGCGCTCATCTTCTCCACAGTGAAGTTCCTGTTCTTCACCGCCTCATCTATCCCTGCGCTCTGAGCCGTCTTCGTCGTCACAAAGATCTttattcctacacacacacacacacacacacacacacacacacacaagatccAGATGTTACAGGACTTGGGACGTACCTGTGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239421 lncRNA upstream 10781 25344206 ~ 25428112 (+) False dupd1
TU239433 lncRNA upstream 10884 25357936 ~ 25428009 (+) False dupd1
TU239428 lncRNA upstream 23494 25411258 ~ 25415399 (+) False dupd1
TU239473 lncRNA upstream 29887 25403842 ~ 25409006 (+) False G202354
TU239474 lncRNA upstream 29887 25403842 ~ 25409006 (+) True G202354
TU239508 lncRNA downstream 21581 25463806 ~ 25464167 (+) True G202386
TU239525 lncRNA downstream 60919 25503144 ~ 25513154 (+) True G202400
TU239527 lncRNA downstream 63130 25505355 ~ 25565927 (+) True G202401
TU239529 lncRNA downstream 67055 25509280 ~ 25509506 (+) True G202403
TU239546 lncRNA downstream 112180 25554405 ~ 25557800 (+) True G202420
XM_034309206.1 mRNA upstream 27634 25400520 ~ 25411259 (+) True dupd1
XM_034309369.1 mRNA upstream 40876 25394338 ~ 25398017 (+) True LOC117598572
XM_034309368.1 mRNA upstream 44591 25390697 ~ 25394302 (+) True LOC117598571
XM_034309370.1 mRNA upstream 49012 25386835 ~ 25389881 (+) True LOC113524867
XM_034309367.1 mRNA upstream 52505 25382865 ~ 25386388 (+) True LOC117598570
XM_034309478.1 mRNA downstream 267668 25709893 ~ 25745120 (+) True polr3a
XM_034309479.1 mRNA downstream 267787 25710012 ~ 25745076 (+) False polr3a
XM_034309535.1 mRNA downstream 331289 25773514 ~ 25791680 (+) True tbata
XM_026911246.2 mRNA downstream 361564 25803789 ~ 25818928 (+) True star2
XM_034309498.1 mRNA downstream 527744 25969969 ~ 25973840 (+) True ndr2
TU239415 other upstream 84603 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 773368 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1056606 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 2040233 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 2109322 23324073 ~ 23329571 (+) True G201214
TU239521 other downstream 55490 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 55955 25498180 ~ 25502628 (+) True G202374

Expression Profile