RNA id: TU239457


Basic Information

Item Value
RNA id TU239457
length 225
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G202342
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25290741 ~ 25290965 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcatttccttataaaactgcacacactgcacctcagatactgctttatttatttaaagtgaaggatcgtcacattaaatactgactttgtttcatttattactgtttactgctctttataggattttttttaaatgtagaaacatttaatttcattatttttgaaggcgtctttactctacagcatttctttgcatgtgactaagacttttgcacagaactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239382 lncRNA upstream 90794 25199710 ~ 25199947 (+) True G202310
TU239355 lncRNA upstream 101414 25186782 ~ 25189327 (+) False G202290
TU239356 lncRNA upstream 101414 25186782 ~ 25189327 (+) True G202290
XR_004579129.1 lncRNA upstream 155576 25134451 ~ 25135165 (+) True LOC113527241
TU239347 lncRNA upstream 179257 25110288 ~ 25111484 (+) True G202286
TU239421 lncRNA downstream 53241 25344206 ~ 25428112 (+) False dupd1
TU239433 lncRNA downstream 66971 25357936 ~ 25428009 (+) False dupd1
TU239454 lncRNA downstream 78365 25369330 ~ 25369655 (+) True G202339
TU239473 lncRNA downstream 112877 25403842 ~ 25409006 (+) False G202354
TU239474 lncRNA downstream 112877 25403842 ~ 25409006 (+) True G202354
XM_034309510.1 mRNA upstream 20088 25260740 ~ 25270653 (+) True LOC113527655
XM_026915668.2 mRNA upstream 20088 25260740 ~ 25270653 (+) False LOC113527655
XM_034309567.1 mRNA upstream 127870 25154992 ~ 25162871 (+) True LOC113527238
XM_034309604.1 mRNA upstream 136844 25146669 ~ 25153897 (+) True LOC117598682
XM_026915692.2 mRNA upstream 210912 25063600 ~ 25079829 (+) True LOC113527669
XM_034309367.1 mRNA downstream 91900 25382865 ~ 25386388 (+) True LOC117598570
XM_034309370.1 mRNA downstream 95870 25386835 ~ 25389881 (+) True LOC113524867
XM_034309368.1 mRNA downstream 99732 25390697 ~ 25394302 (+) True LOC117598571
XM_034309369.1 mRNA downstream 103373 25394338 ~ 25398017 (+) True LOC117598572
XM_034309206.1 mRNA downstream 109555 25400520 ~ 25411259 (+) True dupd1
TU239119 other upstream 625216 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 908454 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1892081 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1961170 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 2084362 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 38244 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 206750 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 207215 25498180 ~ 25502628 (+) True G202374

Expression Profile