RNA id: TU239474


Basic Information

Item Value
RNA id TU239474
length 386
lncRNA type intronic
GC content 0.47
exon number 2
gene id G202354
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25403842 ~ 25409006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tacactctgaccacgctcacactatactcacactacactctatcCACGctcacactatactcacactacactctatcCACGCCACTatactcacactacactctgtccacactcacactatactcacactacactctgaccacactcacactatactcACCCTACACTCTGACcacactcacactatactcacactacactctgaccacactcacactatactcacCCTACACTCTGACcacactcacactatactcACCCTACACTCTGACcacactcacactatactcACCCTACACTCTAACcacactcacactatactcACCCTACACTCTAACcacactcacactatactcACCCTACCCTCTGtccacactcactttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239454 lncRNA upstream 34187 25369330 ~ 25369655 (+) True G202339
TU239457 lncRNA upstream 112877 25290741 ~ 25290965 (+) True G202342
TU239382 lncRNA upstream 203895 25199710 ~ 25199947 (+) True G202310
TU239355 lncRNA upstream 214515 25186782 ~ 25189327 (+) False G202290
TU239428 lncRNA downstream 2252 25411258 ~ 25415399 (+) False dupd1
TU239450 lncRNA downstream 29887 25438893 ~ 25442225 (+) True G202336
TU239508 lncRNA downstream 54800 25463806 ~ 25464167 (+) True G202386
TU239525 lncRNA downstream 94138 25503144 ~ 25513154 (+) True G202400
TU239527 lncRNA downstream 96349 25505355 ~ 25565927 (+) True G202401
XM_034309369.1 mRNA upstream 5825 25394338 ~ 25398017 (+) True LOC117598572
XM_034309368.1 mRNA upstream 9540 25390697 ~ 25394302 (+) True LOC117598571
XM_034309370.1 mRNA upstream 13961 25386835 ~ 25389881 (+) True LOC113524867
XM_034309367.1 mRNA upstream 17454 25382865 ~ 25386388 (+) True LOC117598570
XM_026915668.2 mRNA upstream 133189 25260740 ~ 25270653 (+) False LOC113527655
XM_034309478.1 mRNA downstream 300887 25709893 ~ 25745120 (+) True polr3a
XM_034309479.1 mRNA downstream 301006 25710012 ~ 25745076 (+) False polr3a
XM_034309535.1 mRNA downstream 364508 25773514 ~ 25791680 (+) True tbata
XM_026911246.2 mRNA downstream 394783 25803789 ~ 25818928 (+) True star2
XM_034309498.1 mRNA downstream 560963 25969969 ~ 25973840 (+) True ndr2
TU239415 other upstream 49552 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 738317 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1021555 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 2005182 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 2074271 23324073 ~ 23329571 (+) True G201214
TU239521 other downstream 88709 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 89174 25498180 ~ 25502628 (+) True G202374

Expression Profile