RNA id: TU239475


Basic Information

Item Value
RNA id TU239475
length 234
lncRNA type intronic
GC content 0.47
exon number 3
gene id G202355
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25406097 ~ 25407717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTACACGCTGACTAcactctgactacacactgactacacactgactacactctgactacacactgactacacactgactacactctgactacacactgactacacactgactacacactgactacacactgactacactctgactacacactgactacactctgactacactctgactacactctgactacacgctgactacacactgactacacactgactacactctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239454 lncRNA upstream 36442 25369330 ~ 25369655 (+) True G202339
TU239457 lncRNA upstream 115132 25290741 ~ 25290965 (+) True G202342
TU239382 lncRNA upstream 206150 25199710 ~ 25199947 (+) True G202310
TU239355 lncRNA upstream 216770 25186782 ~ 25189327 (+) False G202290
TU239428 lncRNA downstream 3541 25411258 ~ 25415399 (+) False dupd1
TU239450 lncRNA downstream 31176 25438893 ~ 25442225 (+) True G202336
TU239508 lncRNA downstream 56089 25463806 ~ 25464167 (+) True G202386
TU239525 lncRNA downstream 95427 25503144 ~ 25513154 (+) True G202400
TU239527 lncRNA downstream 97638 25505355 ~ 25565927 (+) True G202401
XM_034309369.1 mRNA upstream 8080 25394338 ~ 25398017 (+) True LOC117598572
XM_034309368.1 mRNA upstream 11795 25390697 ~ 25394302 (+) True LOC117598571
XM_034309370.1 mRNA upstream 16216 25386835 ~ 25389881 (+) True LOC113524867
XM_034309367.1 mRNA upstream 19709 25382865 ~ 25386388 (+) True LOC117598570
XM_026915668.2 mRNA upstream 135444 25260740 ~ 25270653 (+) False LOC113527655
XM_034309478.1 mRNA downstream 302176 25709893 ~ 25745120 (+) True polr3a
XM_034309479.1 mRNA downstream 302295 25710012 ~ 25745076 (+) False polr3a
XM_034309535.1 mRNA downstream 365797 25773514 ~ 25791680 (+) True tbata
XM_026911246.2 mRNA downstream 396072 25803789 ~ 25818928 (+) True star2
XM_034309498.1 mRNA downstream 562252 25969969 ~ 25973840 (+) True ndr2
TU239415 other upstream 51807 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 740572 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1023810 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 2007437 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 2076526 23324073 ~ 23329571 (+) True G201214
TU239521 other downstream 89998 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 90463 25498180 ~ 25502628 (+) True G202374

Expression Profile