RNA id: TU239597


Basic Information

Item Value
RNA id TU239597
length 1179
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G202467
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25692079 ~ 25782711 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGAACTCCGCTTCATCAGAGTTTAATCCTTATGTGTTtactcaaaaaacaaaacagagactTAGCTTTTTAATGTCGTTTATTTCAGAGTTAAAGTCCAGCTCCAACAGTCCAGATTAAACACCACATTTATCTcaaacacacccaacacacagtgacacaataaacacacaaacacactgaaatgtTGCACCACGCTGGTGTTCAGAGttccctctcttctcttttaTACAGTTTAGAGACTTTACAAACCTTTACACTGTAACAGTATCTGAAATTAAATCTTTTATCTAAAAACGTACACCAGTGTCTCACGCCAATCTCACTCAGGGCTCCGCCCACTTGTACAGGTGTGGGAGGAGCTAAAATGGAGGGGTCCCTGTGGATCGGCTTCAGGAAACACAGATATACAACATTCACATTAATACAGAAACTCCAGACCTGACCACTTCACTGACCCAGATTTAACTAATCCAGACTCATTTAATCCAGACTCATTTAATCCAGACTCATTTAATCCAGACTCATTTAATCCAGACTCGGCTCAGATCCAGAATTCACAGGCTACATTATTGCAGTAAATTAATCCCACGCTAATCTGCTTTATTGCTCTTGTTCCAAAACTCAAAGACGTTTCCCCGCGTTTCAATACAGCGTACAACACAAAACCTCACAGTGCTCACGCTAGCGAGCTAATTCTGTTTCTTctctaaagctagctagctagtattatTTGGGGATTTTtttttttttttcttttctttttggagatgttatttaaagttaattagctaattatGTTCGGAGGAATAAAACCCAACCTGAACAGGTTTGACATCTTTTTACGAGGAAATAAACTTCGGATTTAACGGGGGCAGGAGGGAGGGGCAGGAGGGAGGGGCAGGAGGGAGGGGAAGTGAACGAGGGTGTGTTATAAACTGTATTGGAACGAGGTCCGTGGTTTTGGCTCGTGTTCTCAATGCTGATGtgttctttattaaacacacactgaacctgAGACCTCgttgtgtgtgcgcgtgtgtgtgtatgtgttagatAAGTGCTCGCTGTGATGAgatccgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattccctcattatcccaattacaatgagcagataaaaggtccggagttcatttcaagtgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239586 lncRNA upstream 42197 25648389 ~ 25649882 (+) True G202457
TU239571 lncRNA upstream 89641 25598775 ~ 25602438 (+) True G202445
TU239565 lncRNA upstream 105315 25586355 ~ 25586764 (+) True G202439
TU239527 lncRNA upstream 126152 25505355 ~ 25565927 (+) True G202401
TU239682 lncRNA downstream 253202 25948871 ~ 25968572 (+) True G202541
TU239683 lncRNA downstream 253202 25948871 ~ 25957298 (+) False G202541
TU239703 lncRNA downstream 293439 25989108 ~ 25995087 (+) True G202557
TU239706 lncRNA downstream 304079 25999748 ~ 26000315 (+) False LOC117598538
TU239722 lncRNA downstream 337471 26033140 ~ 26033815 (+) False G202567
XM_034309206.1 mRNA upstream 280820 25400520 ~ 25411259 (+) True dupd1
XM_034309369.1 mRNA upstream 294062 25394338 ~ 25398017 (+) True LOC117598572
XM_034309368.1 mRNA upstream 297777 25390697 ~ 25394302 (+) True LOC117598571
XM_034309370.1 mRNA upstream 302198 25386835 ~ 25389881 (+) True LOC113524867
XM_034309367.1 mRNA upstream 305691 25382865 ~ 25386388 (+) True LOC117598570
XM_034309478.1 mRNA downstream 14224 25709893 ~ 25745120 (+) True polr3a
XM_034309479.1 mRNA downstream 14343 25710012 ~ 25745076 (+) False polr3a
XM_034309535.1 mRNA downstream 77845 25773514 ~ 25791680 (+) True tbata
XM_026911246.2 mRNA downstream 108120 25803789 ~ 25818928 (+) True star2
XM_034309498.1 mRNA downstream 274300 25969969 ~ 25973840 (+) True ndr2
TU239496 other upstream 189451 25498180 ~ 25502628 (+) True G202374
TU239521 other upstream 193160 25497715 ~ 25498919 (+) True G202397
TU239415 other upstream 337789 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 1026554 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1309792 24381787 ~ 24382287 (+) True G201962

Expression Profile