RNA id: XM_034309305.1


Basic Information

Item Value
RNA id XM_034309305.1
length 1706
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC117598538
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25999651 ~ 26005825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGTGTGAGATgaagctgaggaggaggaggagagacaatCCCAAACAGGAGGCTGAATATTTCACATCTGCTGCCAAAGACAAGGAGGGATttgatgtgaaatatataaattcatttatagGACGTGGAGTATTcagttgtgttcattttgataaGGGAGATTTTCTTTTGGAGTACAGAGGACAACTCATAAACAAAGCTGAATGTGAACGACGACAGAAGTTATATCACGATGCCATGAAAGCATTCATGTATGAATTCCGTTTCAATGGAAGACTCTTATGTGTCGATGCTTCCAGAGAAGATGGTTCCCTTGGGAGACTTGTCAATGATGACCACATCAgcccaaacagcaaaatgaaaataatcactgtagaGGGAAAGCctcatctgtgtttatttgcgaCTAGAGCATCGACACTGGAGAAGAAATCACATACGATTATGGCAATTCTGAGTTGCCTTGGAGAAATAAGATTGTAGCTGAAGAACACCAACTTCCACCAGAGGAAAACAGCACTATGGCATTGAGTGAGGCCAGGAGGGTGAAAGACAATCAGTCTCTGTCACAGCACCAGGCTGTTTCTGAGGCAGACCCCTTTACCCCTGTGACCGAAGATACCCAGGCAGCCATCAACCAAACAGAACAgAATATAGCTGGAGCCGTCACTGAGGTTACATCAGAGCTGACGTCTGTGATGGACAAGTTGGAGACTGATGTTctgggaggagagacagaaaagAATATAGCTGGAGCCGTCACTGAGGTTACATCAAAGCTGACGTCTGTGATGGACAAGTTGGAGACTGATGTtccaggaggagagacagaaaagaatacAGCTGGAACCATTACTGAGGTTACAACAGTGCTGACGACTATAAAGGACAAGATGGAGCCTGAGGTTCCAagaaaggagacagaaaagAATTGTAAACATGAAATGGTCTTCACAACTGTTTCGAGCATGAACAAATGTGCAGCATGTGTTGGACCTGTAGCATCACTCAAATGGATTGGTCTGAGATGCAAAGtCTGCAATTGTTTTTGGCACAAGTCCTGCTTTGTAAAACTTATTAAGAATGAGTCACTATCATGGAGAGTAAGTACTGGTGAGGATGAATCACTAGATGAAGAATATGTGCCACAGTCAGAGTCAGACAGTGAATCTGAGAGTTCAGTAGAGTTACAAGGAGAATGCCCCTTGAATATGGAGAAACGAAAGGCTATTTATTCCCAGATTGCCAAGTTGAATCCTGAAGGTGCAAGCAAGggcaaagtgtgtgttaagGCCAGAGAAGAAGTTGGTTTACTTTATGAGGAGCAGTTGACTGATGTAGATTATGACAGTGAAGCGAGCTATACACAAACCTCAGATAATCTTTCAAGCAAAGTTCAGGGTAAGCAAGTGTCTGAGACCTACAGAACGTCAAAAGTTGCAGTTTTAGGCAGTGCATCAGACAGTTTAATGCTGCCAACAACAGTcactggaacatctgcaagccAGCAACTGTTGGAAGTAAGAGAGGGAGCTGGTGGAAGTGATTTACATGGAGATGTTGAGGAATCATTAATGGCAGAGGGCAAAGCTAAAGTGGATGAAGCTGAGGAGTGTCTTCAGTCATCTGTAATTTCTTgtactgaaaataagaaaaactactGATGGATTAGAAATTACAAAAGTCATTGCGTACTACAGAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239703 lncRNA upstream 4564 25989108 ~ 25995087 (+) True G202557
TU239682 lncRNA upstream 31079 25948871 ~ 25968572 (+) True G202541
TU239683 lncRNA upstream 42353 25948871 ~ 25957298 (+) False G202541
TU239598 lncRNA upstream 216940 25692079 ~ 25782711 (+) False G202467
TU239584 lncRNA upstream 302501 25641036 ~ 25697150 (+) True G202455
TU239722 lncRNA downstream 28171 26033140 ~ 26033815 (+) False G202567
TU239721 lncRNA downstream 28276 26033245 ~ 26033815 (+) False G202567
TU239723 lncRNA downstream 28276 26033245 ~ 26033815 (+) True G202567
XR_004579260.1 lncRNA downstream 54655 26059624 ~ 26064285 (+) True LOC117598627
TU239757 lncRNA downstream 113755 26118724 ~ 26137814 (+) True G202593
XM_034309310.1 mRNA upstream 17944 25975031 ~ 25981707 (+) False lrrc20
XM_034309308.1 mRNA upstream 17944 25976644 ~ 25981707 (+) False lrrc20
XM_034309309.1 mRNA upstream 17944 25976651 ~ 25981707 (+) False lrrc20
XM_034309307.1 mRNA upstream 17944 25976685 ~ 25981707 (+) True lrrc20
XM_034309498.1 mRNA upstream 25811 25969969 ~ 25973840 (+) True ndr2
XM_034309543.1 mRNA downstream 280705 26285674 ~ 26426786 (+) True sdk2b
XM_034309542.1 mRNA downstream 381883 26386852 ~ 26426786 (+) False sdk2b
XM_034309447.1 mRNA downstream 421880 26426849 ~ 26429873 (+) True LOC117598613
XM_034309448.1 mRNA downstream 432074 26437043 ~ 26444597 (+) True LOC113547530
XM_034309449.1 mRNA downstream 432074 26437043 ~ 26444597 (+) False LOC113547530
TU239496 other upstream 497023 25498180 ~ 25502628 (+) True G202374
TU239521 other upstream 500732 25497715 ~ 25498919 (+) True G202397
TU239415 other upstream 645361 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 1334126 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1617364 24381787 ~ 24382287 (+) True G201962

Expression Profile