RNA id: XM_034309306.1


Basic Information

Item Value
RNA id XM_034309306.1
length 1354
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC117598538
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25999651 ~ 26005825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAAATCACATACGATTATGGCAATTCTGAGTTGCCTTGGAGAAATAAGGTATTGAAGATTGAACTATTCAGTGTTATTGGGCCACGCTTAAACATGCCGGTGCAAACATAACTTACAAATCATTACATGCTACAATCATCTAATTATATTCCCAATATTTTACACTGTCCTAACAAATCTTCACAGATTGTAGCTGAAGAACACCAACTTCCACCAGAGGAAAACAGCACTATGGCATTGAGTGAGGCCAGGAGGGTGAAAGACAATCAGTCTCTGTCACAGCACCAGGCTGTTTCTGAGGCAGACCCCTTTACCCCTGTGACCGAAGATACCCAGGCAGCCATCAACCAAACAGAACAgAATATAGCTGGAGCCGTCACTGAGGTTACATCAGAGCTGACGTCTGTGATGGACAAGTTGGAGACTGATGTTctgggaggagagacagaaaagAATATAGCTGGAGCCGTCACTGAGGTTACATCAAAGCTGACGTCTGTGATGGACAAGTTGGAGACTGATGTtccaggaggagagacagaaaagaatacAGCTGGAACCATTACTGAGGTTACAACAGTGCTGACGACTATAAAGGACAAGATGGAGCCTGAGGTTCCAagaaaggagacagaaaagAATTGTAAACATGAAATGGTCTTCACAACTGTTTCGAGCATGAACAAATGTGCAGCATGTGTTGGACCTGTAGCATCACTCAAATGGATTGGTCTGAGATGCAAAGtCTGCAATTGTTTTTGGCACAAGTCCTGCTTTGTAAAACTTATTAAGAATGAGTCACTATCATGGGGATGCAGAAGGATCACCCACCAAAAGAAGCCAAAGCTGGATGTTCTGGTTGTATTTTCCAAGTTATATATGtggttttgacttttattttagtcatataactcataattatcatttttgttttacctatttttaatttgaaacaaaagTATATGTCATCATATCTCCCAGTCTTTATGGTTGTATgatgtgcatatttatatacttgtttgtttagtctCAAACACAGATGCTTTGCCCATGTCCCATAGAGCACCTGCTGTTTTATGTGCAATAAGCTGGCTATAAGgttcacaattttaaacatcacaatctaattgattcttttgatacGTGTtgtatacaccaatcagacATAACAACCAgtgaaaggtgaagtgaataacattgattatttctctcACGATGGCATTTGTTGAGGGTTGGGATATATTGGTATAACAGTCAGTTCTCTGtgttgatgtgttagaagcaggaaaaatgggcaagggaTGCTACATAAAGGTTCCTCTGAAAGTAACGGAACAGCAAGCTCAATTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239706 lncRNA upstream 38 25999748 ~ 26000315 (+) False LOC117598538
TU239703 lncRNA upstream 5266 25989108 ~ 25995087 (+) True G202557
TU239682 lncRNA upstream 31781 25948871 ~ 25968572 (+) True G202541
TU239683 lncRNA upstream 43055 25948871 ~ 25957298 (+) False G202541
TU239598 lncRNA upstream 217642 25692079 ~ 25782711 (+) False G202467
TU239722 lncRNA downstream 27315 26033140 ~ 26033815 (+) False G202567
TU239721 lncRNA downstream 27420 26033245 ~ 26033815 (+) False G202567
TU239723 lncRNA downstream 27420 26033245 ~ 26033815 (+) True G202567
XR_004579260.1 lncRNA downstream 53799 26059624 ~ 26064285 (+) True LOC117598627
TU239757 lncRNA downstream 112899 26118724 ~ 26137814 (+) True G202593
XM_034309310.1 mRNA upstream 18646 25975031 ~ 25981707 (+) False lrrc20
XM_034309308.1 mRNA upstream 18646 25976644 ~ 25981707 (+) False lrrc20
XM_034309309.1 mRNA upstream 18646 25976651 ~ 25981707 (+) False lrrc20
XM_034309307.1 mRNA upstream 18646 25976685 ~ 25981707 (+) True lrrc20
XM_034309498.1 mRNA upstream 26513 25969969 ~ 25973840 (+) True ndr2
XM_034309543.1 mRNA downstream 279849 26285674 ~ 26426786 (+) True sdk2b
XM_034309542.1 mRNA downstream 381027 26386852 ~ 26426786 (+) False sdk2b
XM_034309447.1 mRNA downstream 421024 26426849 ~ 26429873 (+) True LOC117598613
XM_034309448.1 mRNA downstream 431218 26437043 ~ 26444597 (+) True LOC113547530
XM_034309449.1 mRNA downstream 431218 26437043 ~ 26444597 (+) False LOC113547530
TU239496 other upstream 497725 25498180 ~ 25502628 (+) True G202374
TU239521 other upstream 501434 25497715 ~ 25498919 (+) True G202397
TU239415 other upstream 646063 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 1334828 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1618066 24381787 ~ 24382287 (+) True G201962

Expression Profile