RNA id: XM_026914508.2


Basic Information

Item Value
RNA id XM_026914508.2
length 3704
RNA type mRNA
GC content 0.41
exon number 4
gene id shisa8b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11355205 ~ 11374268 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGCATGTCTTAAGAAACTGGTATTTGTCTTAAGCTAAAACAGtaaattagttagttagttcagaatctgaatcagaataattttattcGCCATGTACAGTTACATGTATTAGGAaattttcttggtgtttggtcacaacacaATGCATTCAACACGCACATCACAGACAGCACAACACAATTAACATCCTAATATACAAATACTGTACCTAATCTACAGATATACAAATATTGCATCTAATATACAAATAGTTAAATAATTATCTTACTTAATAATTTAAGTTAGTTAAATAAGTATACGTTCAAATTCAAGCTTGCATGAATCAACACTTGCTATCAAATTGGAGCAGTCTTATAGCCCCTAATAAGTATTTAGAGCACCATGGTTAGCCCATCTTTTCTACTCCACGTTGTCCTGGCTGCTTTACTTGGGTGTGCCTCACAGGCCCAGGATGAGGCTTTCACAGAGATGGCCAtgcagctgaccaatcagacagCAGATCCCACTGTGACATCAGAGGGAACTCTAATACTGAGCTCACCTGCAGGAGAAATAGTGGAGGAAACAGTCCCACCCACAGGTACTCGCTGCCAGGGTTATTATGATGTGATGGGTCAGTGGGACCCACCATTTAATTGCAATGCAGGTATCTTCCTGTACTGTTGTGGCACCTGCTTTTACCGGTTCTGCTGCCAGTTCCGTCAGCAACGTCTGGACCAGACCTCATGCTCCAACTACGATACACCAATTTGGGCCAACACAGGTAAACCTGTGGCCACTATAACTGATGTACAGTCAGAGCATGAAAGGGATCGCACGCAAATGATTGTCTACATAATCTGTGGTGTGGTGGCCATCATGGTTCTGATAGGCATCTTCACCAAGCTGGGGTTGGAGAGGAGCCGAGGTGGACAAAATGACATCACCAACTCAAGGACTCTGCAGGAGCTACTGAAACAGCCAGGTGGGGATGTGAGCCATGTAGATGGAACCATTAGCAGCTCCACCACCATTGGAGCCAATGGCATTTCAGCTAGGCTGTTACGCAGCCGCAGTGAGCAATATCACCTCAGCAACACAGCATTCAGCCCAACGGGTGGACTCTCTCATCCTCAAAGCAACAACAGTGCGCCTGGCCTCACACACAACAAGTACTCCTCACTGAAGGCTGTTGACACGGCCAGCAGAGGTTACTATAAGAGCTATCCACTCATGGACTTTTCTCAATACCAAACTCTTCCTGCACCATTTCAACCCATCCCAGTGCACCAAAAAGACAAGTCCTATTTCAATCAAGAGAAGCCCTACATGCACCAGGCTCTGCCTTCCCATGATGTCCACTCTGCACTTTCCATTTCCATCCCCACCAACCAACTTGAGAGGAGCTGCATTCGAAAGACCAGCACTCATCCCTTACACCTAAGCTCAAGCTTCACAGTATGTGACTCTGTACCCCGACACGTCCATCGGCAGACCTCACACCCTGGACACCCCAGTCGCAGGCAGACCTATGCCAGCAGAAGGCAATACAGCATAGAGATGCTTCCTGAGCTTTTCTCACAGCCCATGTCCTACGAAGGACGTTCGTCCTATGCTCACAAACACAAGAGCTTTCAAACCAATAGCAAAACAGAGGTCACTGTCTAAGAGTCCTCAGCTGTTTCATTTAATTCACAGACACACCAGCGATATGGCTGTCTTCCCACAGCTGCTTAGCTTTCCATCAGGTTCCTTCAGCCTCAGTAGTTCAGTCTCTGTCCTCTGGTCCTTATGTCTCTGCTACAGCACACTGTCCCAAACATAGAGCTGGGAGGTAAGTGTGCAGCCTGGAACATTGGAATGGTCCCAAAAACTACAGTAACTCCACAGGGATAATGCAAACATCACATTGGCCCTAGGTCTATCTCCACAGGTGACGACAGTGTGAGTTGATCATCATTTTGTGGACTCTTTATTGAGAACATTTAATCAGATAACCTCAGGCAGAAGGCAACACTCAGTTTGAGTAGGTGTCGATCAGCTCTCTTTCAAGGATGTATGTAAGAGCACATTCTCTGTGGGTCTTATGAGAGATCTCCTTGTTTTCTTGGGTCATGTGGTCAGTAAAAGACAGTGCTGAAACAGTCCACAGGTTACAGTATTACAGATCACGCACATTATATTATGTTCATAAGTACCATAAATGAATACAAGAGAagtcagtaacctctttattcCTGTTCTTCTAGTCTTATCTCAGCTCCCCTTTATGGGAGTCTGAAGCAATTGAGACCCCACTGTGATGCTGAGTCGCATGTTCCTGAACTATTCTTACACATCCAGGGAAGGCATCTCCAATTACAATTTCCATTTGTTGAGCTTATGATGCAGAGCAATAGTCTGGAACTGTGAAATCTCTTTCCCCTATGCTTATGACAATTTAGCTCAGAGATCTCTCCAGACCTCTGACAACTGTGACATTTCAATTTGCAAGGACAGATGATGAATCATGTTGCTCCATTATTAAATACAACTTATGCAAAGGTGAAATGGTGAAATCATCAGTTTATTACCAGGATTAGTATGGCGTGTGCATCGCTGCCCTAAACCAACACTAACTCACCTGTTATGGTGGACTAGAATCTGTCAAGATGATCCTGAATTTTAGGGATAGGCTGGTGGAGAGACAAAGGTAAAGATTGCTCATAGATTTCTGCATTTCAAGCACATTTTATCTACAACAAagtataatgttatataaatataaaatgtgtgtgtgtggttgtagtATTcagaatatataaattataaagtgCTTCCAATTATCCCCAGTATTAGCATTTGCTCAGACCTTCTAACTCTGTGAACATCACATTTGTGCACTTTTGTaatcttacatttacatttcattattctGTACTCTACACAtgaatttgtgatttgtgtgGGGAGCATTTGAATGACAGATTATGATACATTTGTAAAGCAAATTTGTAAGAGATGTATGTACATGTACTAATATGTTGTGTTGCACTGTATACCTTTAGAAAAtttagaacctttaaaggttctttggttgtccatTTGGGGGAAACTTTGGTTTCAAaggtttccaagtagaactccTTTTTGGAAGATaaaacccttaattatccagtgacCCCTAAAAGAACCCTTGCAGTACCATTTTCCCCCTAAGCGTGTAAATGTATCTGTTATGtatatactattattatattaattatcttttaatttaaaaggGCTTTTCAGAAGAATTAAGAATAAAGATCTTGTATGCAATCCTATTAGCCAAAGTAGTAATATCTAGAGGTACAATATTTGCACTGAATGCTTAGAGGAGGACAGTGTTGACATGACAATTTAGAAATTATAGaaactgaaaatgtttgtaatgccacaaaaacaaagacagaatgCAAGGGGGTTTTGTGGTAAAGTTTAGTAATTGGTCTGAAAATGTCAAAAGAAGGGCACCACACAGTGCAGTGAATCGTGTAACAAAATCAATTTTGCTCTTAAAAGGTCAGATCTCTGCCTAATCCCTCTACCAATGACTAAATACCTGTTTGAATACTACAGTTACCCATAGTGTAGAATGTATCAGTCTGAGCATTTCTGTGCAGAATGTGAACTCAGAAATATCTGTATAACAAATATACTAATCATGGTTATAGAAGAACTGTATACagaaaaatatggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230242 lncRNA upstream 107098 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 148229 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 234655 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 259027 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 291523 11062164 ~ 11063682 (+) True G194365
TU230438 lncRNA downstream 4193 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 218624 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 223262 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 240121 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 344629 11718897 ~ 11719113 (+) True G194748
XM_026915301.2 mRNA upstream 12121 11339017 ~ 11343084 (+) True desi1b
XM_026914601.2 mRNA upstream 40568 11291299 ~ 11314637 (+) False ep300a
XM_026915267.2 mRNA downstream 39860 11414128 ~ 11420071 (+) True gna13a
XM_026915062.2 mRNA downstream 46885 11421153 ~ 11424736 (+) True LOC113527352
XM_026915061.2 mRNA downstream 46885 11421153 ~ 11424736 (+) False LOC113527352
XM_026915057.2 mRNA downstream 57653 11431921 ~ 11439228 (+) False arsg
XM_026915056.2 mRNA downstream 58908 11433176 ~ 11439228 (+) False arsg
trnaq-cug_16 other upstream 68937 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1290579 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1720138 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1841370 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1842574 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 1098415 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2109033 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2109033 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5481502 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6203015 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile