RNA id: XM_026914514.2


Basic Information

Item Value
RNA id XM_026914514.2
length 2014
RNA type mRNA
GC content 0.45
exon number 11
gene id prodh2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5502423 ~ 5509397 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctctttcatCCAAATTTTTCTTTCGTTGAGTATTCTCCCACCTGTCAGTTTTAGTTACAGCATTCACATAGTAATCACTCGTCTTTCTGGAAGTAACTGCTTGGGCTTGGGAAGGTATGAACTTGGACTTGAATGTCAAAGTATGCTGTTTGATAACTCATGGCAAATAGATAAGTGGATTTTTGTATAAATTTCAAGTGAGAGCTTTGTTGGATTTGAAGAGGGCAAGATCTCTGGAAAGCTCTACCAGAGGAGAGATTTGGACTTGGAATTATTTAAATTCCAGTTTGAGGATAAAGGGCTTCAAAATACACAAAGTTCTGCACAAAATCCACAGAGATGTCCTCTGTTCTCCGCTCGAgtattttacatcatttccaGTCCCTGCACATGATAGGTGTACGGACGCTGACATCAGAACGTGTGGGGTTTGCACCCGTCGGGAGTCATGAGCTCAGGGACCCGGTTCCACCTGCCCTGCTAGCTTTCAAGGACCCACGAGCGTTCCAGGTTAAGAGCTGGTGGGAGCTAATACGAGCGCTTGGGGTTTTTAGACTCTGCTCTTACCCTGTGCTGGTCAATAACTGTGGCAAGATTATGTCGTTTACACGGGCTATCCTGGGCAAACGAGTTTTCGCCATGGTCCTTCGGCCTTTTGTTTACGCTCAGTTTGTTGCTGGGGAAACAGAGAGTGAGATTGCAGTGTCCATGGAGAAGATGAACTCGCTTGGACTACATCCCATGTTGGCTGTTCCCATTGAAGAGGATCTAGGAGAAAGCTCTGGAGAGAAGAGGTATGATGACAACTTGGCAGCCATGTTGGAGTGTGTGCGCATGTCTCACAGCAATGGCTGGAGCAAAGATCCCATGATGCAGCTGAAGATCACTGCCTTGGTCAGCCCTGAGCTTTGTGTTAAGCTGACTTCCTTGCTGAAGAAGCAACATTATGATCTTGACCTTTTGGTTAGAGCAATGGACGGAGAGGCTATTACATTTCCTGGGCTCAGtgaaactgaaaacacacattttctacTTGGACTCAAGAGACTAAACCAAATTGGAGAGGCAAGTGTTAACAAAGTCAGAGTTCTAGTGGATGCCGAGTACACGTACATGAATCCTGCGCTCTCTCTCATCACCATGGCCATGATGAAGAAGTTCAATCGAGATAGTGCCTGGATCTGGAACACATACCAATGCTACCTGAAGGAGTCCAGAGACCTTGTGTTTGATGCTATCCGCTTGTCTGTGGACCAGTCTTTCTGCCTTGGGGTTAAACTTGTCCGAGGTGCATATATGGACAAGGAGAGGAAGCTGGCTAAAAAGGAAGGACGAGCTGACCCCATTCACCAATCCTGGGAGCACACAAATGATAGCTACAACGGATCTCTGGAAGTGATGCTTAACCTGATTTCCCAGCAGCCTGACCACTACAAGATCATTGTAGCAACTCACAATGAAGAATCTGTTAGAAAGGCAGTGACATGGATGACTGAGTTAGGGATTGCTCGAGACAGGGGttcagtgtgttttggtcaACTTCTGGGGATGTGTGATCATGTGTCTCTCACTCTGGCTCAGCAGGGTTTCTCAGTGTATAAGTCCGTTCCTTATGGCTCAGTGGATGACACGCTGCCGTATCTGGTACGGAGGGCTCAGGAGAACCGCACCGTGTTGCAGGGGATCCGCAAAGAGAGAGACCTGCTGAGGCAAGAGCTACGTCGTAGAGTCCGGGAGAAGATCACTCGAGCAAagtagagagagggagaacgaGCAAAAAAACGACAAATcagagaaaatgcagaaaaaagggTCTGCAATATGAATGTGGTTTGTTGGTAGTTATGATAGTTACATGTAGGTATGTGACAAAAGGGTGACTATGGCATACCTATAGAAAATTAAAGGGAATTTATTTAGACTGCTGTTTTTGCTTAGGTGTTGGCTAAACTGATGTCTTGAGTTGAAGTAAAAGCAAGCGAAAAGtaattggtaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006537 glutamate biosynthetic process biological_process
GO:0006562 proline catabolic process biological_process
GO:0004657 proline dehydrogenase activity molecular_function

KEGG:

id description
K11394 PRODH2; hydroxyproline dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226605 lncRNA downstream 13312 5488817 ~ 5489111 (-) False gdpd3b
TU226604 lncRNA downstream 17756 5482620 ~ 5484667 (-) True G191424
TU226592 lncRNA downstream 57256 5442962 ~ 5445167 (-) True G191413
TU226433 lncRNA downstream 115286 5382995 ~ 5387137 (-) True G191279
TU226166 lncRNA downstream 583446 4911734 ~ 4918977 (-) True trnap-cgg_3
TU226650 lncRNA upstream 156776 5666173 ~ 5667846 (-) True G191463
TU226652 lncRNA upstream 158487 5667884 ~ 5669753 (-) True G191464
TU226656 lncRNA upstream 179197 5688594 ~ 5689568 (-) True G191468
TU226688 lncRNA upstream 230581 5739978 ~ 5740199 (-) True G191490
TU226700 lncRNA upstream 259131 5768528 ~ 5776020 (-) False LOC113527291
XM_026915826.2 mRNA downstream 11498 5484691 ~ 5490925 (-) True gdpd3b
XM_034309354.1 mRNA downstream 46064 5446472 ~ 5456359 (-) True lrrc45
XM_026915784.2 mRNA downstream 85816 5405182 ~ 5416607 (-) True sgca
XM_034309110.1 mRNA downstream 179948 5312244 ~ 5322475 (-) True LOC113527073
XM_026914669.2 mRNA downstream 208025 5289712 ~ 5294398 (-) True tmem101
XM_026915248.2 mRNA upstream 3370 5512767 ~ 5526387 (-) True eif3c
XM_026915602.2 mRNA upstream 19252 5528649 ~ 5539726 (-) False ppp4cb
XM_026915603.2 mRNA upstream 19252 5528649 ~ 5539545 (-) True ppp4cb
XM_034309298.1 mRNA upstream 31489 5540886 ~ 5545885 (-) False si:ch211-136m16.8
XM_034309297.1 mRNA upstream 31489 5540886 ~ 5545885 (-) True si:ch211-136m16.8
trnav-uac_7 other downstream 28953 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 200218 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 439028 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 549564 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 583451 4918901 ~ 4918972 (-) False trnap-cgg_3
TU226617 other upstream 101723 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 259131 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 1038674 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2948930 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2965862 8475259 ~ 8475340 (-) True trnal-uag_3

Expression Profile