RNA id: XM_026914525.2


Basic Information

Item Value
RNA id XM_026914525.2
length 1682
RNA type mRNA
GC content 0.53
exon number 13
gene id etv4
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11759981 ~ 11784148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTAAGACCATTCATTAGGACAAAGAGAGAAATCTGAGCTCTTGAAAGAGGAAATTCACCAATCAGGAAGCTTTACGACTGAGCGGACATCCGAAAGCCAGAGAAGTAGCTCCTACCCAAATCAACAGTAAAGAAAACAGCTGCTCCGATTCTGctccacacagcctcaatgAGCGCGAACGGCTAACGCATGGACTGTAACATGGATGGATATTTAGATCAGCAAGTGCCTTACACTTTAGCTAATAGGTCGCAAGGAAATGGGCCCCTAAATAGACTGTTGGTGGCAGCAAAAAGGAAATACATGGACACCGAATTACCCCCTCAGGAATCCGAAGATCTCTTTCAAGATTTAAGTCAGCTTCAGGAGACATGGCTCACAGAAGcTCAAGTACCTGACAGTGATGAGCAGTTTGTTCCTGACTTCATCTCAGAAAACTCAGTGGCATTCCACAGCCCGCCGGTGAAGATTAAGAAGGAGCCTCAGAGCCCAGGCTCAGACCCCAGCCAGTCCTGCAGTCACAAGCAGAGCTTCAGCTATCCCAGTGGAGAGCAGTGCCTTTACGCCAGTGCCTATGAACAGAAGAGAGCATCAGCAACATCAGCAGCAGGACCCAAAAGCTCCTGCCCTGGGACTCCCATGTCCCCCATGCAACATTACTCCCCAAAATCACTGGTGGGCACCCGACATGAAACGGGGTACATGAACTCTCCCTCTGCCAGTCAGTCACACCCCAGCCATGGCCAGACTTACCCCATGAATCCCAGCTCCAGGTTCCCAACTGGCTCAGGAGAGATGTGTGCCCCGTTCGGACCTCCAGGTCAAACTCTGCAGCGTATGCCCTCTACCCCTGCAGGAGGTGCAGGCACTGGGGGTAGCAGCGGGTACCACCGACAGCACTCAGACCCCTGCATGCCCTACCTCCAGCAGAGCTTCAAGCAGGAATTCTTGGACCCGCTGTACGAGCGAGCAGCCCACATGGGCACAGTGGCCCCTCAGCGGTTCCCTCCAGCCCATATGATGGTCAAGCAGGAACCCACTGACTACACTTATGAGCCTGATGTACCTGGTTGCACCTCCATGTACCACCACAACGAAGGCTACCCCAATACCCAGCACAACAATGAAGGCTACATGTTTGAAAGTGACGCCCGCGTTGTTCCAGAGAAATTCGAAGGTGAAGTGAAACAGGAGGGCAGCAGTGTGTTCCGTGACGGCGCCCCCTATCAGCGGCGTGGCTCTCTGCAGCTCTGGCAGTTCCTGGTAGCCCTCTTGGATGATCCTGGCAATGCACATTTTATTGCCTGGACCGGTCGTGGCATGGAGTTCAAACTCATCGAGCCAGAAGAGGTCGCCAGGCTCTGGGGGATGCAGAAGAACCGTCCAGCCATGAATTATGACAAACTGAGTCGCTCCCTGCGCTACTACTACGAGAAAGGAATTATGCAAAAGGTGGCTGGGGAGCGCTACGTTTACAAATTTGTGTGTGAGCCGGAGGCACTGATCTCCCTGGCATTCCCTGACAATCAGCGGCCTAGCGTGAAGGCCGAGTTTGAGCGCTATGTCAATGAGGAAGACACGGTGCCACTGTCTCACTTGGACGAAGGAGTGTCTTACCCCTCTGAACCCGCTGCCACCAACTTGGGCCCTCAGCCCTACTCCAAAGGCTACATGTACTAA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0035108 limb morphogenesis biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230688 lncRNA upstream 40877 11718897 ~ 11719113 (+) True G194748
TU230532 lncRNA upstream 138721 11614389 ~ 11621269 (+) True tmem106a
TU230523 lncRNA upstream 157549 11597530 ~ 11602441 (+) True G194623
TU230527 lncRNA upstream 166899 11592892 ~ 11593091 (+) True G194627
TU230438 lncRNA upstream 380800 11378461 ~ 11379190 (+) True G194571
TU230779 lncRNA downstream 255070 12038503 ~ 12038728 (+) True G194828
TU230784 lncRNA downstream 279402 12062835 ~ 12063498 (+) False LOC113527436
TU230950 lncRNA downstream 356579 12140012 ~ 12140220 (+) True G194989
TU230966 lncRNA downstream 361568 12145001 ~ 12145207 (+) True G195002
TU230980 lncRNA downstream 390961 12174394 ~ 12176119 (+) True G195016
XM_026915440.2 mRNA upstream 28002 11725403 ~ 11731988 (+) True meox1
XM_026914515.2 mRNA upstream 90544 11664117 ~ 11669446 (+) True sost
XM_026915706.2 mRNA upstream 104140 11645860 ~ 11655850 (+) True dusp3a
XM_026915004.2 mRNA upstream 132426 11624596 ~ 11627564 (+) True arl4d
XM_034309334.1 mRNA upstream 140084 11614441 ~ 11619906 (+) False tmem106a
XM_026915446.2 mRNA downstream 12484 11795917 ~ 11831664 (+) True spata20
XM_026915104.2 mRNA downstream 73961 11857394 ~ 12033353 (+) False cacna1g
XM_026915103.2 mRNA downstream 73961 11857394 ~ 12033353 (+) False cacna1g
XM_034309037.1 mRNA downstream 73961 11857394 ~ 12033353 (+) False cacna1g
XM_026915109.2 mRNA downstream 73961 11857394 ~ 12033353 (+) False cacna1g
trnaq-cug_16 other upstream 473722 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1695364 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2124923 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2246155 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2247359 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 689250 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1699868 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1699868 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5072337 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5793850 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile