RNA id: XM_026914550.2


Basic Information

Item Value
RNA id XM_026914550.2
length 2668
RNA type mRNA
GC content 0.52
exon number 21
gene id noc3l
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6417476 ~ 6436006 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACTGgctgtttcctgtgtgtgtgaggcgcATGTgaggggatgtgtgtgtgcaggagaaCAGAGCAGGGCTGAGTGAGCTTTCCACGCTGCTGTAAACCACTCTGAGGCTCCAGGAGAacagagtcagtgagagagtCAGTGAGGGAGTCAGTGAGAAACATGGCGGCGGCTACGAAAAagcacaagaagaagaagaagccgaGCTTCCGCAAGCTGCTGAAAACCAGCAACATCAAGCTGGATAACAAGCTGAAGAACCGTCAGTTCAAGCAGCAGAGCACGGCCAAGAAGCAGCGCAAGGAGCAGAGGAAACTGCGGCAGGCCCTCAGTGATGCGTCCCAGCAGACCGTACAGCCGTTAGAGCGCTACGAGAAGAAGCCAGaggaggaagatgatgaggaggagtTTCTGGAGTCGCTGCCCACTGATATGATGGAGGACGACGACCTGGAGGAGATCAGAGCAATGGCTCAGAAAGCCTCGTTCCTCACAAGAGACCTTTCCTCCTGTGCTCCTGCTCACACCAAAAAGCGCAAGTCGGACCAGATGTTAGAAAAGTACGAGAAGATGCCCAGGAAGTTGAAacaagaggaagagaaggaggtcATTCATCTGCTGCCAATCAAAGACAAGAGCGGCCTGATCCCTCAAACCATGGAGAAGCCAGTGGTGCGGAAAGCAGACGAGGAGGATGAACAGGAGGAAGCGAACGACGAAGACGAGTCAGAGCAAGTGGAAGAAGCACAGAGCTTCCTGACACTGACTCCACAAGAACAGCTGAAGCTTCGCTCACAGAAGCTGATGGAGAGGAAATTACGCATCGCGAGCTTGGGATCAGTTATTCTAGCTGATCCAAACTCTAACATTAAGAAGCTGAAGGAGCTACGGGCCATGCTGATGGAGACGGACCCGTGCGTGGCTGTTACGGTCAGGAAGCTGGTCATGGTCTCACTTATGGAGATCTTCAAGGACATAGTGCCCTCTTACAGGATCCGTCCTctgactgaagaagaaaaaaagaccaaGGTAAAAAAGGAGACCCAGCAGCTAAGAGAGTTTGAGGAGGGGCTCGTAAGTCAGTATAAATTCTACTTGGAGAATCTGGAGCAGACTGTCAAAGACTGGaagcagaagaagcagaaggGCAGTCAGGCCGTGGCTCTGGCCTCCTATAAAGGCCTGGCCGAAGTGGCCGTCAGGTGTCTGTCCGAACTGCTGGTGGCTTTGCCGCACTTCAACTTCCACAACAATATCATCGTCGCCGTGGTGGCGCTGATGAGCGACCCGACCAAGAAGGTGTCAGAGATGTGCTGTGAAGCAGTCAGGAATCTGCTGAAGCAGGACAAGCTGGGCCAGGCTTCACTAGCCACAGTGAGGGTCATCTCAGGAATGGTCAAAGGCAGGAACTACAACGTTAAACCAGAGgtcctGAACACATTGCTGTCCCTAAGGATAAAAGAGGTGGATGTGAAGAAGGACACAGAAGACCTGGCCCCCAAACAAAAGTTCATGAACTTccaagagaagaagaagaacctgTCCAGGATGCAGAGGAAGTGGAAGAAAGCTGAAGAGAAACTCCAGAAAGAGCTGCTAGAGACCGAAGCGTCTGAGAGCAAGTACAAGAAGCTCAAGCTGcacacagagacactgaacaTCGTGTTCCTGATCTACTTCAGAATCCTGAAGAAAGCCCAGAAGTCCGTCTTGCTTCCCTCCGTTTTAGAAGGTTTAGCAAAGTTTGCTCATCTCATAAACTTGGAGTTCTTTGATGATCTGCTCACAGTTCTTCATGATTTAATTATGTCCGGCGATCTGTCACACCGAGAGAGTCTCCACTGCATCCTCACAGCCTTCCACATCCTGTCAGGTCAAGGTGACGTGCTCAATGTCGACCCGCTGAAATTCTACACCCACTTGTACAAAACCCTGCTTACACTGCGCGCAGGCGCGTCAAACGAGGACACAGGCATCGTGCTGCAGTGTGTGGACGTGATGCTGAGCAAGCGCAGGAAGCAGGTCAGCCTGCACAGAGCGCTGGCTTTCCTCAAGAGACTCGACACACTCGCTCTGCACGTGATGCCTGACTCGTGTGTGGGCATCCTGGCGGCTAACAGGGCACTCATACATacCTTCCCCAAGTGTGACATCATGCTGGATAACGACATGCAGGGCAGCGGTGTGTATCTGCCTGAGCTGGATGAGCCGGAGTACTGCAACCCTCAGAACACCTGCCTGTGGGAGCTGCACACACTCAAGagaCACTACCACCCGACGGTGAGGAAATACGCCACTCATCTGCTGGCTGGAGCTCCGAGTGAAGGTGCCGGTGCACTGAGTTTAGAACTGAGCAGAagAGCACCAGTGCAGCTGTTTGAAGACTACAGCGTGAAGGACATGACCTTTAACCCACCAGTTGCAGGACCACCCAAGAAGAAGGAACATTTCACAATTGGAGAGGCTTTCCTGGACTCGGGTTTGAAAGCGCAGATCGATGCAGCGCTTCAGGAGGACGAGCAAATACCCCTCGACTTTGCAGCACATCTTTCACAGAAGTGAGCGAAGCTGGTGTAACTGTAAATACGTCTGTAATAAGATGTTTTATATCGCtgtgtttcaaataaaaaagggaaaagttTGTTCCCAAGTGGCCTTTCAACTAGAAA

Function

GO:

id name namespace
GO:0019216 regulation of lipid metabolic process biological_process
GO:0007517 muscle organ development biological_process
GO:0005730 nucleolus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227076 lncRNA downstream 121683 6293530 ~ 6295793 (-) True G191788
TU227074 lncRNA downstream 126564 6290411 ~ 6290912 (-) True G191786
XR_004579134.1 lncRNA downstream 155878 6259865 ~ 6261598 (-) True LOC117598466
TU227058 lncRNA downstream 165294 6251422 ~ 6252182 (-) True G191772
TU227049 lncRNA downstream 197095 6219812 ~ 6220381 (-) True G191763
TU227251 lncRNA upstream 27483 6463488 ~ 6488739 (-) True G191947
TU227253 lncRNA upstream 27483 6463488 ~ 6473583 (-) False G191947
TU227256 lncRNA upstream 42184 6478189 ~ 6478817 (-) True G191949
TU227257 lncRNA upstream 43762 6479767 ~ 6481169 (-) True G191950
TU227332 lncRNA upstream 109027 6545032 ~ 6546253 (-) True G192012
XM_026915432.2 mRNA downstream 117497 6285060 ~ 6299979 (-) True fra10ac1
XM_026915431.2 mRNA downstream 146842 6268873 ~ 6270634 (-) True rbp4
XM_034309407.1 mRNA downstream 252542 6163064 ~ 6164934 (-) True LOC117598588
XM_034309406.1 mRNA downstream 262594 6153790 ~ 6154882 (-) True LOC117598586
XM_034309551.1 mRNA downstream 282362 6133944 ~ 6135114 (-) False LOC117598661
XM_026914996.2 mRNA upstream 1674 6437679 ~ 6460359 (-) False tbc1d12b
XM_026914995.2 mRNA upstream 1674 6437679 ~ 6460359 (-) True tbc1d12b
XM_026915245.2 mRNA upstream 29010 6465015 ~ 6504729 (-) True LOC113527434
XM_026915558.2 mRNA upstream 71845 6507850 ~ 6513085 (-) True abi3b
XM_034309642.1 mRNA upstream 110936 6546941 ~ 6594390 (-) True itga3b
TU226699 other downstream 641456 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 803522 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 944006 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1115271 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 1354081 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 112066 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2022322 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2039254 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2411657 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2640784 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile