RNA id: XM_026914566.2


Basic Information

Item Value
RNA id XM_026914566.2
length 2581
RNA type mRNA
GC content 0.48
exon number 8
gene id lgi1b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6302378 ~ 6310386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGAGAAAGCACCAAGACCATTGGCTGAGACCCTGCACACATCTTTATTTACTGTAGGCTATCAGTGTCGCCTTGGAGGGGTGGCATGGTCTCTACACAAGGCTGTTTACTACATTAGATAGTGTATTTCTTTTGAACTGGGAAGTATTGCATGTGGATGCAGTGCGCGTCTTTATATTCGGGACGACGCGCTTGGATGCCTTTCTGAGATCTTTTGCGTTATCCATCGACCGAGGCGCATCGCATCCTCCCAGCTCCCAgctctcagcagcagcagccgtGATCTCGTCAGGAGCAGCTCTGTATCCCAGGCTCTGAAGTGAAGCGGGACAGGATGCGACACGGCGGCGGGACGCTGCGGGTCACTTTGACGCTGCTTTGCGCCGCCGCGCTCCTTCTCTCGGCGGAGAGCCGCAGGGGCAATAAGCAGCCCCGGTGCCCTGTGGGGTGCACATGCACCAAAGATAACGCCTTGTGTGAAAACATCAGAACTGTTCCGCACACCTTCCCTCCAGACGTCGTCTCCTTATCGTTCGTGAAGTCTGGATTCACTGAAATTGCCCCAGGAAGCTTCCTGCACACGCCGTCTCTCCAGCTGCTCTTATTTACAGCCAACACCTTTGACTCTATTGATGAAGATGCATTTCAGGGCCTGCCACATCTGGAGTACCTGTTtattgaaaacaataaaatcgAGTCCATGTCACCTTTGGCCTTTCGAGGTTTGAAATCTCTGCTCCATCTGAGTCTTGCCTATAATAACCTTGAGACATTACCCAAAGATGTTTTCAAGGGGATGGATGCCTTAACAAAAGTGGATCTTCGAGGAAACATGTTCATCTGTGACTGTAAACTGAAATGGCTAGTTGAGTGGATGCACAACACCAATGCAACAGTGGACCAGATACACTGTAGCGGGCCGGCGCTTTATCAAGGGAAGAAGATCAATGAGCTGATGCCCCAGGCGTTTGACTGTATAACTGCAGAGTTTGTTTCCAAGAAGACCTTGAAGTTTGAGTCTATTTCAGTAGAAACCTTCACCGTTGGGAACGATCAGTATGCGGTGTTTGCACAGCCTTTTGCGGGAACATgtagcttcatggaatgggacCATGTCAACATGGAGTTCAGACATTACGACAGTATAGAGAGCACCTCCACCGTGGTCTGTAAGCCAATGGTGATTGATGGCCAGCTTTTCATTATTGTCGCACAACTTTTTGGGGGCTCACACATTTACAAGCGGGACACATCAGCCCACAAGTTCATCAAGATCCAAGACATTGATATCTTGAAGATCCGCAAGCCCAATGATGTTGAGACGTTCCGCTTGGACGGCGAGTGGTTCTTCGCAATTGCTGACAGCTCCAAAGCAGGCTCCACTACCGTGTACAAGTGGAATGGCAACGGCTTCTACTCGCACCAGTCTCTACACCCATGGCACCGTGACACGGACGTGGAGTACCTGGAGATCGGAGGCAAACCCCACCTGATCCTGTCGAGCAGCTCGCAACGGCCCGTTGTCTATCAGTGGAGCCGGAGCCAGAAGAGGTTTGAGCAGCGCACTGACATCCCTGAGACAGAGGATGTATATGCTGTCAAGCACTTCAGAGCCAGGGGTGAGCTTTATATCTGCCTGACACGCTTCATTGGAGACTCGAAGGTGATGCGGTGGGATGGTGCCATGTTCACCGAGGTGCAGAGTGTGCCATCGCGTGGCTCTATGGTCTTCCAACCTGTGACAGTAGGAAGCTGGCAGTACGCCATCCTTGGCAGCGACTACTCGCTCACGCAGGTCTACCAGTGGGACTCCAAGAAGGGCCGCTTTGTGCACTTCCAGGAGCTGAACGTCCAAGCACCAAGGGCTTTCTCCCTGGTATCCATTGACAACCATGAGCTCCTGCTTGCCTCCAGTTTCAAAGGGAGGACACAGATCTACGAGCACCTCATCATCGATCTGAGTAATTGAAGCATTGCTTGAAGGTTTTTGCTGAAAGTGCAGGGGGACAGACTCATGGAGACGAGCTTGCTGTCAGAACTCACGTGCGTTCTCTAGATGACTAATGATGCTTCCAGATGACCGCCTCTCTAGAAGTCCTTTGTGTCCTTCACCATTGTTGTCATCATCTAGTCTGCACTTTTCAGTTTTACTCTTTTTAACCCCTCCTCTTCTTAACAAAAGCAATTGTTCTTGTATTATCTCCCTGCGAACAAAAGCTAGTGGGACATTTGAGAGGTataataaagaaacacaaaccGCAAATTTAGTGATTAACCGTTGACGCCATAGTAGGTTGGCCAGTAAATCGGTGACAGATTTTTACTGTAGTCTTAAGCAGTTTGtaacttttatacaaaaaaaataaaaaaatctggctGACACATTTTTTACAATAGTTATGGTAGATTGAATGAacaattttgcattttgtaaTTCAGTTTAGGCTAATCATAATGCAGTGAATTTAGATGTGATAGAATTTTGTAGGTATGTCATTTTAGACAGAAGGTTTAGCCATGTAATTGTTTATTCTTTGTCATTACTGTGTAGAAATAATAAACCAATTTAATAGAAATGTG

Function

GO:

id name namespace
GO:0048854 brain morphogenesis biological_process

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226989 lncRNA upstream 31493 6268524 ~ 6270885 (+) True G191719
TU226978 lncRNA upstream 85284 6215273 ~ 6217094 (+) True G191711
TU226826 lncRNA upstream 247173 6001068 ~ 6055205 (+) True G191595
TU226822 lncRNA upstream 353792 5946225 ~ 5948586 (+) True G191591
TU226819 lncRNA upstream 361531 5940621 ~ 5940847 (+) True G191588
TU227164 lncRNA downstream 150425 6460811 ~ 6461014 (+) True G191866
TU227167 lncRNA downstream 153003 6463389 ~ 6473466 (+) True G191868
TU227354 lncRNA downstream 386346 6696732 ~ 6696970 (+) True G192029
TU227359 lncRNA downstream 415599 6725985 ~ 6728391 (+) True LOC113527389
TU227373 lncRNA downstream 467778 6778164 ~ 6785596 (+) True G192043
XM_026915427.2 mRNA upstream 18463 6273566 ~ 6283915 (+) True pde6c
XM_026915428.2 mRNA upstream 34144 6261670 ~ 6268234 (+) True cep55l
XM_026915429.2 mRNA upstream 34144 6261675 ~ 6268234 (+) False cep55l
XM_026914749.2 mRNA upstream 42417 6253948 ~ 6259961 (+) True prrt2
XM_026914750.2 mRNA upstream 42417 6253948 ~ 6259961 (+) False prrt2
XM_026914638.2 mRNA downstream 519 6310905 ~ 6320106 (+) True slc35g1
XM_034309170.1 mRNA downstream 20091 6330477 ~ 6416809 (+) True plce1
XM_034309175.1 mRNA downstream 20091 6330477 ~ 6416809 (+) False plce1
XM_034309173.1 mRNA downstream 20091 6330477 ~ 6416809 (+) False plce1
XM_034309176.1 mRNA downstream 20091 6330477 ~ 6416809 (+) False plce1
trnas-gcu_4 other upstream 72075 6230222 ~ 6230303 (+) True trnas-gcu_4
trnas-gcu_3 other upstream 77193 6225104 ~ 6225185 (+) True trnas-gcu_3
trnal-aag_3 other upstream 78272 6224025 ~ 6224106 (+) True trnal-aag_3
trnas-gcu_2 other upstream 78761 6223536 ~ 6223617 (+) True trnas-gcu_2
trnal-uag other upstream 79580 6222717 ~ 6222798 (+) True trnal-uag
TU227356 other downstream 414935 6725321 ~ 6728391 (+) False LOC113527389
trnap-cgg_4 other downstream 460921 6771307 ~ 6771378 (+) True trnap-cgg_4
trnap-ugg_14 other downstream 462055 6772441 ~ 6772512 (+) True trnap-ugg_14
trnal-uag_1 other downstream 463217 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_15 other downstream 464370 6774756 ~ 6774827 (+) True trnap-ugg_15

Expression Profile