RNA id: XM_026914568.2


Basic Information

Item Value
RNA id XM_026914568.2
length 1369
RNA type mRNA
GC content 0.45
exon number 8
gene id si:ch211-141o9.10
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11136857 ~ 11141931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTTCTGCTAAACAACGCCGTCGCGCCCACAACACCATATTTGGCGAAATTCTAAAACTTATAAAGGCAAAACGTTAAACGCATTAGCTAGTTAACCGCTGAAATCTACCCCAAACACAGGACTAGAAACAAACTGTATGAGCTTAGCAACTAAACGGCTGTTATCAAGTATGCTCACGTCCAGTAGCTAATCCACTCGAGGCCTATTGATCAAGGAATCTCAACTTAATTTACGACGGTGTCTAATTTGAAAAAAGGATGGGTCCACGcaaaagaggagagaagaggagaaaagaaaaaaatccaataaaaatgGAGGAAACTGAAGACTCAACTGAATTAGGTGAACCATCAGAAGACATCACTGAAGAAGTggtgaaggaaaagaaagtaaagtcaaaacaaaaaaagtacattGGTGCCCATGTCTCCATTGCAGGAGGCATATGGAAAGCAGTTGAAGCAAGTGTAGAAATGGGGGGGCACagttttggattatttttggGTTCCCAACGCTCTTGGCAAAGGCCTGCCCTTGATCAGACTGCTGCAGTGAAATTCCAGCAGGCATGTGCTCAACACGGCTTTGACCCAACTCACATTCTGCCCCATGGATCTTACCTGATGAACTGTGGCTCTCCCAAAGAAGATGTATTTGGTAAGAGCCAGGCCATGCTGGTTGATGAACTCGGGCGCTGCAGTGTTTTGGGCCTCACTCAGTTCAACTTCCACCCTGGGGCCTCCATAGACTCCAGCAAAGAGCAGTGCATCGAGAGGATCGCCCAAGCTATAAACCATGCTCACCAGCAAATACCTGCAGTCTGTACTGTTCTTGAAAATATGAGTGGACAGGGAAGCACTGTGGGTGGACAGTTTAATGAGCTGAAGAGCATAATTGACCATGTTCGAGATAAGACGCGTGTTGGAGTATGTCTAGACACATGCCATGCATTCGCAGCAGGTTATGACATTTCTTCAGCAGGAGGAGTGAAGTCTGTGCTTGACGAATTTGACCAAGTGGTTGGACTGCCCTACCTGAGAGCAGTTCATCTCAATGACTCAAAAGGTAAATTGGGCTGCCGTTTGGATCGCCATGAGGACATTGGCCGTGGACAGATTGGCATCTCTGCTTTCCGAAACATTGTGAACGAGCCTCGACTCGACAATATCCCTCTCATTCTTGAGACACCTGGGcgCCCAGGTTTTGAATATGATGAGCAAATACAGCTCCTGTATTCTCTCTGTGAGGACTAGAATGCATGGGGGCGTCTTcagtatatgaatataaatatttcgTTTTCTGTTTGATTCTactcacatactgtacatttcatgCAGACATATAATAAACAACTTGGGTTTAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230204 lncRNA upstream 16307 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 40679 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 73175 11062164 ~ 11063682 (+) True G194365
TU230097 lncRNA upstream 168824 10965638 ~ 10968033 (+) True G194278
TU230092 lncRNA upstream 171240 10964950 ~ 10965617 (+) True G194276
TU230242 lncRNA downstream 105832 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230438 lncRNA downstream 236530 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 450961 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 455599 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 472458 11614389 ~ 11621269 (+) True tmem106a
XM_026915656.2 mRNA upstream 36354 11096965 ~ 11100503 (+) False maff
XM_026915654.2 mRNA upstream 36354 11097033 ~ 11100503 (+) True maff
XM_026915655.2 mRNA upstream 36354 11097218 ~ 11100503 (+) False maff
XM_026915487.2 mRNA upstream 198978 10912118 ~ 10937879 (+) True shisa9a
XM_026914905.2 mRNA downstream 8151 11150082 ~ 11158390 (+) False cdc42ep1a
XM_026914906.2 mRNA downstream 8151 11150082 ~ 11158390 (+) True cdc42ep1a
XM_026914907.2 mRNA downstream 8151 11150082 ~ 11158390 (+) False cdc42ep1a
XM_026914997.2 mRNA downstream 44394 11186325 ~ 11200049 (+) False zc3h7bb
XM_034309323.1 mRNA downstream 44806 11186737 ~ 11200049 (+) True zc3h7bb
trnal-aag_8 other upstream 1072231 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1501790 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1623022 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1624226 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1624617 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 144266 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1330752 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2341370 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2341370 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5713839 16855770 ~ 16863495 (+) False anapc16

Expression Profile