RNA id: XM_026914574.2


Basic Information

Item Value
RNA id XM_026914574.2
length 2098
RNA type mRNA
GC content 0.46
exon number 8
gene id syt15
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14349833 ~ 14354606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGTGTGTAATGTAGcctctggatgtgtgtgttgattaacCAAGTAGAGCAGTCTCAGGAACACTGTGGTAATCAGACCACTGTGGTCTGATTTGTGGCCAGACTCAGAGACAAGAGAGCTGCTGAAGAAATGTATGGAAGTAGCAGCAGTATGGGACAATGCAACTCATAACCACACAGAGAGGGATAAAAACAAACTGGAAGTTGGTGGTGGCTTTGGCTATTCATGGCTGATCCCATGGTAGCATTGGCCACTGGTCTATCTGCCGtacttctctttcttttgctgATTGGCCTGGCAGCATATCTCTTATGGAAGATGAGGCAGGTCCAGAGATGGGACAGACAACTGATCAGCACTAACCCAGTTATTCCGCCATGCACGCCTGTGCTCCAAACATCACAAGGTAGCAGCTATGGTTTCAAGAGTTCATCCCATTCAGCAGTGCCtgaagggagggaggaagaggagcaaTGGGAACAGCACCCACATCTGCATGCCCAGCGTGGCTCTCTAACAATAGGCAGCTGGTTCCCACTGGGCAGCCTGAGGCCAGATCTGTACCAGCTTCCCGAAGAGCCAAGTGAGTGGGCACAGCCCAGTGGCTCCACTGTACGCCTGTGTTTCGCTGTGCAGTATCAGCAGGAACAAGAGCAGCTGGTGGTCTCCCTGCTCCAAGCTGCCAACCTGCCTGCCCAATGCCAAAGCAATGCCACTCTGGTCAAACTGCAGCTCCTGCCATCTGAAGATCGACACCATCGTCAGGCCAAGGCCCGGTGCAAAGGCTGTCAACCACAGTTCAATGACACCTTTGTGTTTCAGgTGTCTAATAACAATGTGGACCAGTTCACTCTACGCATGAGTTTGTACAGTGTGGATAGACTGAAGAAGCACCACCTGGTGGGCCATGTTCTGTTCCCTCTCAGACACTCTGAACTGCTAGAGGCAGCTGGCAAAGTCCTGTGGAGAGACCTTGAGACTGAGAGTGATCTGCCCCTTTCAAAGCACGGCAATATCCAAGTGTCTCTGAACTACAGTCAGTCTCTACAGCGCCTCACTGTGGTTGTGCTTAGAGCCCGAGGACTCCAATGTCCCAGCAATGCGGATGTTTCTGTCCAGGTTTCTCTGCAGATACACACTCAGGTAGTGAAAACAAAGTGGACGCCAGGAGCCAGAGGCAGCAACCCCACTTTTAATGAGAAGCTGACTTTCAGGCTTCTCCCTCTGCAACTAGATGCAGCCTGCCTGAGCCTGGAAGTCCAGCAGGCAGCCTCTGAAGAGCCTGCTGAAGTGCCAAGCTCCAGGACCAAGGCACCAATATCACTTGGACTCGTGGTCATTGGGCCTTTTATGTATGCCAGAGGCAGGGAGCTGGAGCACTGGAATGAGATGATCAGTAAATCGCAGGAGCTGGTCAAGCAGTGGCATGGACTGGGAGCAGCTAACAACACTCACAGACCAACGTGAACAACACCACAACCTGAAGTTCAAGAGAAAGGACAACATTcccttaaaatatttaatatatttaaccTAAGCAGTCATAAGCAGATGGTAAGACAACTGTAATAATAAGAGTAGTAGAAGCAGACAAGTTGGAAAAGCTATAgcagaaatataaaacatatgtgTATGTCAGTTCTGAAATGTCATACTTAATACATAAGAAAGGTCATGctttaaaaattaagaaatgtcaTATTTAACACATAAAAAGCTAGATTTCTTATTATCATCTattcatttttcagatgtgtGTACAAAAACAAAGGTTACAATGGTAGAATTAcaactacattttattttacattttatttctgtaatcaTTTGACATATTGATGAAATAGAAGTGAATTTGCCTGTAACCTCTGGCAATATTATGAAAGCAGTGTATTCACACACTACGGTTAGTTTTTAAGGACGTGAATGCTTTTTATGAATACAAAGCAGTGAATTTGGTTAAGCCTCTTTCTGCAGTTGATCATGAAATCCAGTAGTGTAAGGCCTCTAAGATACAGACAGACTGATGCAAACAACATATTGCACCTTAGCCTCCATCCCATCTTAAGCATagtgcaaagcaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232482 lncRNA upstream 11563 14337963 ~ 14338270 (+) True G196315
TU232479 lncRNA upstream 22473 14327102 ~ 14327360 (+) True G196312
TU232442 lncRNA upstream 25552 14287359 ~ 14324281 (+) True qki2
XR_004579315.1 lncRNA upstream 62007 14280234 ~ 14287826 (+) True LOC117598693
TU232472 lncRNA upstream 85447 14264176 ~ 14264386 (+) True G196307
TU232527 lncRNA downstream 169299 14523905 ~ 14526083 (+) True G196360
TU232554 lncRNA downstream 223300 14577906 ~ 14578458 (+) True G196378
TU232565 lncRNA downstream 243172 14597778 ~ 14601439 (+) True G196386
TU232571 lncRNA downstream 250697 14605303 ~ 14614460 (+) False G196387
TU232573 lncRNA downstream 257687 14612293 ~ 14614657 (+) True G196387
XM_026914571.2 mRNA upstream 15284 14330419 ~ 14334549 (+) True timm23a
XM_026914990.2 mRNA upstream 26036 14296291 ~ 14323797 (+) False qki2
XM_026914486.2 mRNA downstream 15104 14369710 ~ 14391752 (+) True si:ch73-127m5.1
XM_034309568.1 mRNA downstream 40108 14394714 ~ 14445832 (+) True ndst2b
XM_034309569.1 mRNA downstream 40108 14394714 ~ 14445832 (+) False ndst2b
XM_026914650.2 mRNA downstream 185894 14540500 ~ 14546876 (+) False hexdc
XM_034309207.1 mRNA downstream 185929 14540535 ~ 14546876 (+) True hexdc
XR_004579176.1 other upstream 791320 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 791404 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1876094 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 3063565 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 4285207 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2501164 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3222677 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 3800545 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4087280 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4451479 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile