RNA id: XM_026914589.2


Basic Information

Item Value
RNA id XM_026914589.2
length 1408
RNA type mRNA
GC content 0.45
exon number 11
gene id lcmt1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10713814 ~ 10720682 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGcgcggtgcattgtgggaacaGTCGCGAGTGGATAAGGATGTAGACTTGCAGCCAAGGCTAAGAAATTATcgtgtatttttaaaacctgCTTATCACTTTATAATCGCATAGTTTTCGtttaaataatgaagaaaaagatcATGTAACCTTCGACACGATTTAAGTGAAAGTTAATGTCTAATCTGTAGCTCAGAGCTTTGTGTTGTTGCATGAGCCTAGATtgtagagtgagtgtgtaatgGCGTGTGGATTTCACATGTAAACAAAAAGCAGTAATTCTGACATCCCTGTGATTTAGTGAGTGTTCATGGCGTCCAAGGCGCCTTTCACTGACTCTGACACCGCTGATGAAGCTGTCAGAGCAACATGCGACGATGCATCCACATGCAAAAGgtttgCAACAAGCAAAGGATACTGGACTGACccttacatacagtattttgtgcGTCAGATAGGTGAACGCAAGGCACCTGAGATTAACAGAGGCTATTATGCCCGTGTCCAAGGAGTGAACCACCTGCTTGATGCATTTCTTAAAAAGACTCAGTGTGAATGCCAGGTGGTGAACTTTGGAGCTGGACTGGACACCACTTTCTGGAGACTGAAGGCTGAGAACACTTTGCCGAAAAAGTACTTTGAAGTTGACTTCCCTATGATTGTTGCCAGGAAGATACACCATATCAAGACAAAGCCTCCTTTGTCAAAGCCCTTGATTGAGACCCATTCCGCTGATTCACTCCTATTAGATGGCCACAACCTGGACTCAGACAGATACTGTATCATCGGTGCTGATCTCAGAGACCTCCCAGGGTTAGAGGAAAAACTCAGAAAATTCCACATAAATACAGAATTGCCAACACTCTTTGTTTCTGAATGTGTGCTGGTGTACATGACCCCAGAGCAATCCTCCAAACTAGTGCACTGGGCTGCACACACCTTCAACACTGCCATGTTTATCAACTACGAACAGGTGAACATGGCTGACCGCTTTGGGCAGGTCATGATTGAGAATTTGCAGAGACGACAGTGTAATCTGGCTGGAGTGGATGTCTGCCAGTCCTTGGATTCTCAGGAACGCTTCCTGTCTACAGGATGGGAGAGTGTGAACGCACTGGACATGATGGCAGTCTATAGCCTGCTTCCTCAGGAAGACATAAGCAGGATTGAACGACTGGAGTTTTTAGATGAAAAAGAGCTACTCCAGCAGCTTCTCCAGCACTATAGTATCTGCTGGGCAGTGAAGGACACACTCAATCTAGGCATTTCACAAATTGGGTTTTGAGTTTAACTGCGACCCGGTTGGGAGGACTAGAAGTCTCTGTGCCAAGGTCAACATGAATCGGAGGAAGTCATTTCAGCTTATTTTTCCTTTGTGACGTCAATAAAAAAGATGAGACCACTAAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K18203 LCMT1; [phosphatase 2A protein]-leucine-carboxy methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229892 lncRNA upstream 1813 10711321 ~ 10712015 (+) True G194113
TU229865 lncRNA upstream 51365 10594229 ~ 10662463 (+) True G194091
TU229857 lncRNA upstream 52878 10659878 ~ 10660950 (+) True G194087
TU229853 lncRNA upstream 67375 10644938 ~ 10646453 (+) False msrb1b
TU229700 lncRNA upstream 363208 10350199 ~ 10350620 (+) True G193972
TU230004 lncRNA downstream 59981 10780663 ~ 10780884 (+) True G194201
XR_003402886.1 lncRNA downstream 68085 10788767 ~ 10790017 (+) True LOC113527761
TU230092 lncRNA downstream 244268 10964950 ~ 10965617 (+) True G194276
TU230097 lncRNA downstream 244956 10965638 ~ 10968033 (+) True G194278
TU230188 lncRNA downstream 341482 11062164 ~ 11063682 (+) True G194365
XM_026915348.2 mRNA upstream 20329 10690548 ~ 10693499 (+) True LOC113527483
XM_026915965.2 mRNA upstream 23805 10669180 ~ 10690023 (+) False grid2ipb
XM_026915961.2 mRNA upstream 23805 10669181 ~ 10690023 (+) True grid2ipb
XM_026915962.2 mRNA upstream 23805 10669181 ~ 10690023 (+) False grid2ipb
XM_026915079.2 mRNA upstream 58796 10651288 ~ 10655032 (+) True mlst8
XM_026914645.2 mRNA downstream 1758 10722440 ~ 10724659 (+) True aqp8a.1
XM_026914752.2 mRNA downstream 6011 10726693 ~ 10728551 (+) True aqp8a.2
XM_034309529.1 mRNA downstream 34237 10754919 ~ 10779575 (+) True rhbdf1b
XM_034309528.1 mRNA downstream 34239 10754921 ~ 10779575 (+) False rhbdf1b
XM_026915530.2 mRNA downstream 34360 10755042 ~ 10779575 (+) False rhbdf1b
trnal-aag_8 other upstream 649202 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1078761 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1199993 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1201197 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1201588 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 565515 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1752001 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2762619 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2762619 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6135088 16855770 ~ 16863495 (+) False anapc16

Expression Profile