RNA id: XM_026914596.2


Basic Information

Item Value
RNA id XM_026914596.2
length 4484
RNA type mRNA
GC content 0.41
exon number 2
gene id cdk5r1b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12179023 ~ 12185038 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagatagcactgcttcatccctccatctcggCATCTCTAAccgacacagagagagagagagagagagagagagggagagagagaggcaaaagCACTAGAGCACATCACAGACTGCATGCCCACACCTCTGGCAAGACTGACGGATTctccttgtttttattttttgttgttgttgttgttgttaacgCCATTTTCTTTTTGGATTCGTTTTTTAAATACGTTATTcgtactttttatttctttattttaaaacgCATTTCTTGGTATGGTTGTTCGAGTCTTCCCTTGATGCGCAGCGTATTACAGGATATACAGAAGCAGCCATTACTGCAGCTCGTGTTTTCTCACACCGTGGAGAGGAACATCGTGCGGGAGTGGAGTAAAAGAATTCTGGAAGAAGGAAAGAGCTCCTTCAGTCATTCTCCACCCAGACACCATTGTTGTCTAGGCTGAGCACCAGTTCATATTTTGATGCTGACCTTACACTAAGCCTGGTGTCTGGGTCTCCATTTTTGGAAGCAGTGAGGCAAGATCCTCAGCTCCAGTACCAGGCATATTCTGTGCATTTGCTGTGAGGACTCTGCACATCCATCTCTGGCATCATGGGAACCGTCCTGTCGCTCTCTCCCAGCTACCGGAAGGCTGCCCTGTTTGAGGATGGTCCAGCCACAGTGGGCCCCTACACGGCTGTTCAAAACAGCAAGAACGCCAAAGACAAGAATTTGAAGCGTCACTCGCTCATCAACGTGTTACCGTGGAAGCGGATAGTAGCTGTCTCGACCAAGAAAAAGGGTTCTAAGAAGGTGCAGCCCAATACGACATACCAGAACAACGTCACTCATCTGAACAATGAGAACTTGAAGAAGTCACAGTCCTGTGCCAACCTCTCCACATTCACCCAGGAGCAGTCAAGCCCATCCAACCAAGGCTCTAAAAGCTCTAACAATGTGGCCTCATCTGTCAAGAAAGCACCCTTGTCCAACTCTAGTGTGGCTCCTGGCACGCCCAAGAGGGTGATCGTTCAGGCCTCAACCAGTGAGCTGCTGCGCTGCCTCGGTGAATTCCTGTGCCGGAGGTGCTACCGGCTCAAGCACCTTTCTCCTACTGACCCAGTGTTATGGCTGCGCAGCGTGGACCGTTCCCTGCTGCTGCAAGGCTGGCAGGACCAAGGTTTCATCACACCAGCTAACGTTGTCTTTGTTTACATGCTCTGTCGAGATGTGGTCTCTTCAGAACTAGCCACAGAACATGAGCTGCAGGCAGTGCTTCTTACCTGTCTCTACTTGTCCTACTCCTACATGGGCAATGAAATCTCCTATCCTCTCAAGCCATTCCTGGTGGAAAGCTCAAAGGAGACCTTCTGGGACCGCTGCCTGTCCATAATCAACCTGATGAGTGCCAAGATGCTGCAGATCAACTCAGACCCACACTACTTCACCCAGGTGTTCGCAGACCTCAAGAACGAGAGCCagaaggaagaggagaggagccGTTTACTCATTGGGCTAGACCGGTGAGGGAACGCTGAAGAGTATAAAGTGGGATCGCACCCTAGTCTGGCATTTTTGAATGGGATTCCAAAAGTTTTAGTAGACAGCAGTCTCTATATTATGAGAATGCATTTAATATGTATGAAATCTATACAAATTTACCCTTTTCAAGGTATGACTGATCATTACTACGTTCAGATGTTGACAAAACTACTGAATTTTAACAATTTGATCTTAAAGTTCCACCAGGTTTGTATATGATGAAGGTTCAGGGCAGATATGCCAGATCTGGGTGCACCCAAGTAGTCTTGtatgattaatatttaaattcacccacaaaaaaagacatcaagaagatcaaaaaacagaaaaacatgacaaagaaaacAGTAGGAATAGGAACATCAATTTAAGTATGAATGTGTAGAAGCCTGACCGGCCACAGAGTACTGGAGATGTGTACTGCCTTTTGTGTAATGGTGTCTTACCAGACTGGTTCGCTGCAGACAGTGAGGACTGAGACTGTGACTACGAGGCAGAGGACATCACACCCACACTGCAGCCACGCTGTTGGATGCtcattaaataacacacactttgGCTTTAGTAGCAGTATGTATAAATATGTCTTGTGATGACAATAAGGAGAAGGGGAGCTCCAGTGATACATATATTTTATCGATGAATTTTGACATTGTGGCAGCACTGCACAGCGGGGTGGAAGGTGGAAGGTGTTAGGCACACCGCTGTAAAAGGCCTACTTTATTTTCATCAATATGGATTTAAGTTCTACTCTGCAGTGCAACTCTGGGGCTCTATCCATTGATttacttgtttcttttttacttgGAAATGTAACCGGATGCATGTGTGCCATGCAATTTTGTATGGTGTTTTGAgggtaaaaatgttttatttatttaattccatTGAATCTTTAGAACCAACTGCATCTGCAATTAGggaatgcctttttttttttaatcaaagtgtAAGTTTATTTAGCTATGCTTGCTACAGTGAGCCATGATTGTACAAAGtatcttttgttgttttgtgtcacATTGTGTCACTGTCTAGTTGGGCAACGATCcatatagacaaaaaaaaagcttaatgtAAATTTTGCAAAACCAGTGCCATACCTTTGATGAAAATCATGTAGGTctaaaaaaatacaccaaaggGGGGCAATCTTTGAAATGGTTCATTAATTCTAAGTAAGAATATCTATTCAGTCTtaatttattgttgtttatttattctcttaGCACATCCATtgtatttaaaagtttattaatgTATTGTATAAATGACTAGTACAATGGCTACTTTCACGTGTAGCATTTAGACGTAGGTGATTTGTGGTAAACCTGGTTACCTTTGGTGGAAATGAAGATTGTGGGTGATGCGTTTTGAAGGATTTAGTTAAGGATATTCCATCTAAGAGCTTCATCCATATCCATTGACAAATCTGAGTATCACCAAGGGTATTCATCTGTGCAACAAGGAGACGCTGTTGGTTTCAGCCTATAAATACCTGAGACCATTCTTCCTCTGCTGAGATGTaccacatttttaataaaacaacaggTAGAAGAGATAATCATTTACAGACAGTCTAGTTCTGGCATTTTATGTCACGTAACATCACCATGGATGATGAACGAACACCTGAGAGAGTGATTGATTCATGCACTCATAAGCCAAATATGAAGGAAATGGTCAAGGTGCGAATGTGTTTGATCCTCGTCCAGAATTTaagaagaattttttaaaaatctgacatGGATCTTTAGGCATGATATCACTGAATGAAACAGTTGATCACAGGCAAATacttaattaatgtaataataataaataatgttatgaATTAGTTCTAAATATGAATAACTGACATTGTCATCacgtcagtttttttttattagggcAGAAAAACCTTGCTGTAATTTTGGAACCTGCAGCTGCATTGTGATATTAGACTGAAACCTCAAAGTTGATCTTTCTATACATCTCAGCAGTAATCAATTACGCATGCTTTCTTTCAGTAGAATATTTCTTTACAGACATAGAAAAAGTGCTACTCATCATATAAGCACACATTGTCACATTTAGCTCTGTACAGTACGTTGTTCCATGTTGGCTATGTTCTCATGATATGATGGCTGAAGGCTGCCTCGAACCACTGAgacctgaagatgaatggatggaaggGGAACTGTATGAATACATGCCCTTGCTGCTGCATTGCTATGTGTGACAGAGGGCATACTGGAATCGAGAGGAGAATGTGAGAGGTGGTTGTTAATGTGCAATGTGTGGATCAGATATTAAAGCCGAATAAGGACCATAAGGCCATAAAGACTTGCACTTTTCTCCAGATATTACTCTGGGAAAATTGAAGGGGCTTTCAAATCATAGGGACTAATACAGGGGAGTTCCCTTCACTGCCTGCTTGCCATCACTTACCACCGATCACAACAACGTGCCATTTTCCCCCCACTTACATCACTGGCTAGTCAGTTgttaaaacttaaaaagaaagaaacgagAGAAAATTACGTCACTTTATTTCAGTATCTTGTCATATTTCTTTGttgaacaaaaaagaaacagtgtttcaaaacaaaaaaaggaaaggctCTCTCAATGACTGCATGTGTGCGTGAGAGTGAGAGATCATTTGTATAGAAGAGTGTGTAAGGTATTTTTTTCCTATGGGGGCTGGGGACAATGTAAGGCAATGCTTTTAAGATGAGAAAACAACATGGACTGGTGGGTGGGCAGGGCACTGAACTGTTACAAGAACAATAGAAAAAGCTGTTGctgtaatagattttttttttcagttcggttctgcttatttttatttatttttgtactgtGATGGAAAAAATGCACTGATCGTTAAAGATGCACAACTGTGTGgctgtcattatttttttctaagtgtATTTCCTTCATTAAACTCTGTATTTATCAGC

Function

GO:

id name namespace
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0016533 protein kinase 5 complex cellular_component
GO:0016301 kinase activity molecular_function

KEGG:

id description
K11716 CDK5R1; cyclin-dependent kinase 5 activator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230980 lncRNA upstream 2904 12174394 ~ 12176119 (+) True G195016
TU230966 lncRNA upstream 33816 12145001 ~ 12145207 (+) True G195002
TU230950 lncRNA upstream 38803 12140012 ~ 12140220 (+) True G194989
TU230784 lncRNA upstream 115525 12062835 ~ 12063498 (+) False LOC113527436
TU230779 lncRNA upstream 140295 12038503 ~ 12038728 (+) True G194828
TU231012 lncRNA downstream 64022 12249060 ~ 12249755 (+) True G195047
TU231048 lncRNA downstream 186018 12371056 ~ 12371285 (+) True G195083
TU231049 lncRNA downstream 188972 12374010 ~ 12374280 (+) True G195084
XR_004579205.1 lncRNA downstream 266855 12451893 ~ 12453678 (+) True LOC117598562
TU231214 lncRNA downstream 365096 12550134 ~ 12550360 (+) True G195225
XM_026915677.2 mRNA upstream 36280 12141560 ~ 12142743 (+) True LOC113527660
XM_026915249.2 mRNA upstream 93664 12062808 ~ 12085359 (+) False LOC113527436
XM_026915251.2 mRNA upstream 103909 12062808 ~ 12075114 (+) True LOC113527436
XM_026915250.2 mRNA upstream 113470 12062808 ~ 12065553 (+) False LOC113527436
XM_026915106.2 mRNA upstream 145670 11857394 ~ 12033353 (+) False cacna1g
XM_026915940.2 mRNA downstream 84647 12269685 ~ 12317104 (+) True tbkbp1
XM_026915883.2 mRNA downstream 163922 12348960 ~ 12360643 (+) True tbx21
XM_026915356.2 mRNA downstream 193440 12378478 ~ 12383567 (+) True pnpo
XM_034309096.1 mRNA downstream 193751 12378789 ~ 12383567 (+) False pnpo
XM_026914609.2 mRNA downstream 205755 12390793 ~ 12398133 (+) True cdk5rap3
trnaq-cug_16 other upstream 892755 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2114397 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2543956 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2665188 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2666392 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 287645 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1298263 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1298263 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4670732 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5392245 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile