RNA id: XM_026914599.2


Basic Information

Item Value
RNA id XM_026914599.2
length 10077
RNA type mRNA
GC content 0.49
exon number 31
gene id ep300a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11291053 ~ 11314637 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCTGAGAACGTTCTGGAGTCTGGCCCGCCTTCAGCCAAGAGGCCTAAACTATCCTCTCCGGCACTTTCTGCCTCAGCCAGCGATGGAAAcgACTTTGGCTCACTCTTTGACCTGGAGCATGACCTGCCAGATGAGCTTATCAGTTCCTCTGAGCAAGCTCTGGCGAATGGAGGGGACCTTGGGCAGCTCCACACAAGCCTGGGTGGAGGTGGAGCAGCAGTCAGTGGGCTCGGAGGGGTCGGCAGTGCTGGCCAAGATGCAGCTGCCAAGCACAAACAACTCTCTGAGCTGCTCCGATCAGGAGCGCCACCTGTAGCAGCGCAGCAGCAGCAAGGAAGCAGTCCAGCTGGGGCACCTATGGGGCTTATGGGGAGCATGAAGGCATCTCCAGGGCCCCAGAACATGGTGCCTCAGGGACAGCAGCACATCTCCCCTCAGCAGGCCAGCCTGTTTCAGCAGCAACAGATGGTGGGTAACATGAACAGAACTATGATTGTACCTCAGAAAGGTAATGGTCAGCAGCAGCCAGGGGCCCCTACACCTCAGCAGCAAGGCATGATGGGAGGACAGATGATGAATGGCACACCTAGAATGAGCTACCCCAATCCAGGCATGGGCAGTAATAGTAACCTCCTGGCTGAGACCCTCCAGCAGCAGGCAGCAGGAGGCCAAGGTGGACTGAGAGCACAGCAGCCTGGAACATTAAACAAGATGGGGATGATGGGAGGTGCAGGCACCTATGGAGGCCCCTATAATCCAAATGCAGGTCAGAGTCTGAGTGGTGGAGGGCTTGCCCCGCAGCTCATGAACAAACCAGGTTTACCCAACAGCTTGGCCCAGTTCAGCATGGACAAAAAAACCCAGCCTATGCCAGGCATGCCGTCCATGGCTCCCCAGCAGTCAACAGCTGGCGGTGCTGGAGGGGCAGCAGGGATGGTACCTAATGCCCCGGGAGGGCTGGGTCCATCATCAGCCGCGTCAGTAGGAGCAGGAGTTCCTCCAACAGCTGACCCAGAAAAGCGCAAACTCATACAACAGCAGCTGGTTCTCCTGCTCCATGCCCACAAATGCCAGCGGCGGGAGCAGGCTAATGGGGAGATACGCCAGTGCAACCTGCCCCACTGTCGCACTATGAAGAATGTCCTCAACCACATGACACACTGCCAGGCTGGCAAATCCTGCCAGGTGGCACACTGTGCCTCATCACGCCAGATAATCTCCCATTGGAAGAACTGTACACGGCATGACTGCCCTGTGTGTTTGCCACTGAAGAATGCAGGAGATAAGAGGAATcaacagtgtgagtCCCTACTAAGTACTGCTAACGTGGGCTTAGGCACCACTTTGAGTACCGCACCAGGTGGCCCACACAATGCTCCCAATCTTAACACTCCAGGTCAGATAGACCCCAGCTCCATTGAGAGAGCTTATGCAGCTCTGGGACTCACCTACCAGGGTAACCAGGCACCCTCACAGCCTGCCCAACAAACACCTAGGCCACTCAACGCTATGGGTGGGAACCCAATGGGTGTGAATGGGGCTGTTGGTGTCCAACCACAGAGTCAACCATCTAACCTTCTTCAAGATCCTATGCTGCATGTCAACATGAATGCTCCAAATCTGTTGAGTGATAGTAGTGGTGTGGGCAATATAGGCTCACTGCCTGTGGCCACTCCAGCTGCTGGTCCTGGCATGAGAAAGAGCTGGCATGAGGACATCACCCAGGATCTACGCAACCATCTCGTCCACAAACTCGTCCAGGCCATCTTCCCTACCCCGGATCCAGCTGCGCTGAAGGACCGACGCATGGAGAATCTAGTGGCTTATGCTCGTAAAGTAGAGGGGGACATGTATGAATCTGCAAACAGCAGGGCAGAGTATTACCACTTGCTAGCAGAGAAGATCTACAAGATACAGAAGGAACTGGAGGAGAAGCGGCGGATGAGATTGCAGAAACAGGGTATGATGCCCACTCAGCCTGTAATGTCTCCTGCTGGGATGCAGCAGGGACCCCCTGGCATGGGGCAGCAAGGACCACCGACAGGGCTGCCCCCAAATGGCCCTCTATCTGATCCATCAATGGTGCGGCCCGCTGGACCAAACCAGATCGGTAACAGGATGCAGAACCCTGCTGGAATGAATCAAATGCCATTTAATCAAATGCCCATGGGTCAGAGATCCACTCCTCCTCTTCCACTTGGTACGCCCCTCAATCAGATGCCTATGGGGTCTACAAGGATGGCACCAACTAATGTTGCACAAATGCAGAATCAGTATCTACCATCCGGCCAGTTTCAGGGTCCAAGCCCAATGCTTGGTACTGGGCCGGTTGGTATGGCACAGCCTGGCCCTCAGGGTGGCATGGCCCAGcaTGCTCCAATTCCGACACCACCGTCTCTGCCAGCCAGTAGTCCTTTAGCCCAGCCTGCCTCTGTTGGGGGAGTGGGTAGTGGGGTGTCAGTGGGCTCCTTAGGCCCCAACAATGTGGTCGGAGTGCCTCCGTCATCCACTCCCTCTCAGTCCATCAGCCTTTCGCACTGTCCAGCTGTCCGACAGAGCTCTCCCTCTCCAGCACGCAGCCGCACACCCACTCCACACCTCACACCACCTCCAAGCCTACAAGGTTCACAGACTCCACAGCCTCACACCCCCAGTTTGCCACACTTAAATCTGGGTGCCGGTCAGCAGCAGCTACCTCAGCCTGCTAACACTGACAAAGCTATGCAACTACAGCAGCCATTAGGAGGGGCTCCCTCAACACCAAACGCTGCACTTGCGCCTCAGCATCCACCCACTCCACTGTCTCAGAAGGGCTCTCTGCCAGTAGATGGGCAGGCTGCTACTCCTGCTTCTGTAAGCAGTGCCGAGGCATCCTCCCAGCAGGTACCCTCAGATGTTACTGCCACCCTTGAGCCcaaggtggaggatgaggaggaagaggtaGATGAGGAAGAGTCAATGACGGGACGAAGAACTGGAAAGAAAGGAGATGTAAAGGCTGAGGAAAAGCATGAGATAAAGAAGGAAGAGCCATCAAGTGAGGGATGTAAAAGTATTCCCATGGAAACATCTATGGCAGCAGGGGAGGACAAAAAGCCTGAACTGAAGACTGAGCCTAAAGAAGATGATGTTGGTTCAGGCACCCCCGGCACCCCAGCTGGAATACCTAATAAAAAGAAACTCTTCAAGCCTGAGGAGTTGAGACAGGCCCTAATGCCCACACTGGAGTCTCTCTATCGTCAGGACCCGGAGTCTCTTCCTTTCCGCCAGCCTGTGGATCCATCACTCCTGGGAATACCTgATTATTTTGACATAGTAAAGAATCCTATGGACTTGTCTACTATAAAACGCAAACTTGATACAGGCCAGTATCAGGAGCCATGGCAGTATGTGGATGACATCTGGCTCATGTTCAACAATGCCTGGCTCTACAACCGCAAGACTTCACGGGTATACAAGTACTGCTCCAAACTGGCCGAGGTGTTTGAGCAAGAGATAGACCCTGTCATGCAGAGCCTTGGTTATTGCTGTGGGAGAAAGCGGGAATTCTCCCCTCAAACTCTGTGCTGCTATGGCAAGCAGCTTTGCACTATACCACGAGATGCTGCTTACTTTAGTTACCAGAACAGTTCACCAAAATATGGACTTCTTGCTGACAGGTACCACTTCTGTGAGAAGTGTTTCAACGAGATCCAGGGTGAAAGCGTGTCCCTAGGGGATGACCCATCCCAGCCGCAGACATCCATCAACAAGGACCAGtttgaaaagaagaagaatgacaCACTTGACCCTGAGTTATTTGTGGAATGTATGGACTGTGGGCGTAAAATGCATCAGATCTGTGTTCTGCACCATGACACTATTTGGCCTACAGGCTTTGTTTGTAGCGAGTGTCTAAAAAAGTTGAACAAGACCCGCAAAGAGAATAAATATTCTGCTAAAAGGCTGCCCCAGACTAAACTGGGCAACTTCTTAGAAACTCGTGTTAATGACTTTCTGAAGCGCCAAAACCACCCAGAGTCTGGTGAAGTCACTATTCGTGTTGTCCATGTCTCTGACAAGGTGGTAGAAGTCAAACCAGGAATGAAGTCCAGATTTGTGGACAGCGGTGAGATGCCAGAGTCCTTCCCATATAAATCAAAAGCTCTGTTTGCCTTTGAGGACATTGATGGTGCTGATGTCTGCTTTTTTGGCATGCATGTGCAGGAATACAGCTCAGATTGTCCACACCCTAATCAAAGACGGGTATACATATCCTACTTGGACAGTGTTCACTTTTTTCAGCCACGTTGTTTAAGAACTGCAGTATACCATGAGATTCTTATTGGGTATCTGGAGTATGTAAAAAAATTAGGGTTTACTACAGGCCACATTTGGGCCTGCCCTCCCAGTGAGGGAGATGACTACATCTTCCACTGTCACCCTGCAGACCAAAAGATACCCAAGCCTAAGCGACTACAGGAGTGGTACAAGAAGATGCTGGATAAAGCTGTGGCAGAACGCATTGTACATGACTATAAGGACATCTTTAAACAGGCGACAGAGGATCGTCTCACTAGTGCCAAAGAGCTGCCTTACTTTGAGGGTGACTTCTGGCCCAATGTGCTTGAAGAGAGCATTAAAGAGTTGgaacaggaggaagaggagagaaaacGGGAGGAGAACAGTACTTCCAGTGAAAGTGTAGATGCTACAAAGGGTGACAGCAAGAATGCCaagaaaaagaacaataaaaagaCGAGCAAGAACAAGAGCAGTCTGAGCCGAGCCAACAAAAAGAAACCAGGGATGCCAAACGTGTCAAATGACCTATCACAAAAACTTTATGCCACCATGGAGAAGCATAAAGAGgtATTCTTTGTCATCCGGTTGATGGCTGGGCCCAATTCCAATGCTTTACCACCAATCATGGACCCCGATCCATTAATGGCATGTGACCTGATGGATGGGCGAGATGCTTTCCTTACACTGGCGCGGGACAAACACCTGGAGTTTTCCTCATTGAGGCGATCTAAATGGAGTTCCATGTGTATGCTGGTAGAGCTGCACAACCAGAGCCAAGACCGATTTGTCTATACCTGTAATGAATGCAAACACCATGTTGAGACACGCTTCCACTGCACTGTTTGTGAGGATTATGACCTTTGCATCACTTGCTACAACACAAAGGGTCATGAGCACAAGATGGAGAAGCTGGGCCTGGGTCTGGATGATGAGAGCAACAGCCAAGCTGCAGCCTCCATGCAGAGTCCTGGTGACTCACGCCGTCTTAGCATTCAGCGTTGCATTCAGTCTCTAGTACATGCTTGCCAGTGCCGCAATGCCAACTGCTCACTTCCATCCTGTCAAAAGATGAAAAGAGTGGTCCAGCACACCAAGGGCTGCAAGCGTAAAACCAATGGTGGTTGCCCTATCTGCAAGCAGCTTATTGCTCTTTGCTGTTACCATGCTAAACACTGCCAAGAGAACAAATGTCCTGTACCTTTCTGCCTAAACATCAAGCAGAAACTGCGTCAACAGCAGCTCCAGCACCGGGTTCAGCAGGCTCAGATGCTTCGGAGAAGGGTGGCTAGCATGCAAAGAACAGGCCAACCACTAGTTGGTGGAAATGAAGGGTTGCCATCACCAAGCAACAATGGTACTACTGGCCCTGGGACACCCACACAAAGTACTCAACCTCCTGCCCTACAGCCACCCACTCAGCAATGTCCAACTCCTGTCCCCCAGCCTGGAGTTGCAGGAGgccctcagcagcagcagcagcaacttGCAGGAATGGTGCAGCATCATCAATTCCAGCAGCTACCTGCCGGTGGTGGGATGATGAACTCTCCACAGCAACAGATGGttcaacaacaccaacaacaacaaccaccaccaccaccacagccACCCTCAGTACAGCAGCTTCAGCATCCAAACAGCCTCCCTCCATACGTGCAAAGACCTCCGGGTTCCTCTCCACTTTCTCAGTCTATGGGGAAACCTGGCATGGCCCCAGCCAGTCTGCCGCAGCAACAACAGTCAAACCCAGGTCAGTCAGCATTTCCCTCACAGCAGCCCTCAGGTCCTCCTGCTGCAGCCCTGGAAATGGCCTTGAAGATTCAGCGAGTGGCAGAGACTCAAAGGCAAATGGCTAAACAAAAAAGCCTGCAGATGAATCAAGGACCAGTTATGATGGCCCCACACACCCTGCACCAGGGCCCTCAGACTCAAAACCCAATGGGTCTGAACCATCCTGGAGCAGGGATGGTGGGGTCCCAGGGATTACAACCCCAGGCACAATCCACTGTAGCTAGGGCTCAAATGGAGCAACAGCAAGGTGTGGTAGGACCTGGCATGCAGCAACAAGGAGGGCCTCAGAACCAGCTTCCTCCTCAGGTGCAAATGCCACAAGCTCCACAGGCTGGGCCTCAGCTCCAGCCTCCACAGCAGCAGTGGGGAACCCCTGGGATACCTCCTCAGCAGCGACCGGTAATGTTGAGTCAAATGGGTCATGCAGGATTGGTTGCTGGGCAACAACCACAGCAGGTTTCGCAACAGCAGCCGCAGCTTCCCCAGCAACAGGGGCAACCAGGAGTGATGGGTATGATGGGTGGCCCAGGTGGTGCTACAAACCCAGGGACTGGCAATGGAGGTCTCCTCCAGAGTGCCTTGCAAGACCTTCTTAGAACTCTGCGTTCCCCTAGTTCCCCCCTTCAGCAGCAACAGGTCCTGAAAATATTGCGCTCAAATCCTCAGCTTATGGCAACATTTGTCAAGCAGCGTGTGCCGAAATACCTTGGAAGAGGTGGGCCTGGTGCTGGAGGTGCAGGCCCAGCAGGAATGGAGAGCCAGCagctaaatgtaaatacaggggGCAGTCAACCAAGTATGCACATGGGCCAAGGGACCGGGATGCCCCCCACCAACCCGCttcagcagcaacaacaacttCAACAGCGTTCCCTCCTGGGTGTGAATATGCAGCAGCAGCAAATGGCTTTGCAGCAGCAACATGGTGTTATACCTGGTCAAGGCTCAAACATGGCCAGTATGTCTCCCCAGTTCAAAGAATTCATGAGGAAACatttgcagcagcagcagcagatggGAAACCTCAGTCAGCTTCAGCATCCCCAGTCACAACAGCAGCAAGGTTATCTTGGCCAGCCTGGGATGCCGCCTCAGCAGCCAGGTCAAGCTCAAGCTGGTGGACTTCCGCAGCAGCAGCAAGGAGGACCACAGGCTGGGCTGCAACAGAATTATTCAGGATCCATGTCTCAGCAGGTGGCAGCAGCTTTACAACAGAGGttgcaacagcagcagcagaatgcCATGGGTGGGCTCCAAGGGAGTGATGGTAGTAGTTccctgcagcagcagcaactACAGGCCCCTCAAGGTGGTTCTCAGCCTCCTCAGGCCATTATTCAGCAAGCACTGCACCAAAGGCTCCtccagcagcaacagcagcagcagcatctaGGTGGTGGGTCTCCTGCTCAGCATAATAATCCCATGAGCCCTCAACAGCCAATGTCCCAGTCTCCGCATTTACAGGGCCAACAACTGTCCACTTCTCTTAGCAACCAGGTGCGGTCACCCCAGCCATCACCACGGCCCCAGTCTCTGCCACCGAACTCGAGTCCATCTCCTCGCATGCAACCCCAGCCTTCACCACACCGCATCTCTCCCCAAACCCAAACAGGCTCCCCACACCCTAGTCATCTTCCCCATGGCATGGTAGCACCTCCACCTCCTCAACAACCACAGCAGCCATCCCAACAGCAACAACAGGCTAATGCTTTGGACCAAGCCCCATTTGGGTCAGACCAGAATGCCATGCTTTCACAGCTCGGTGGAATGGGGCCCCTGCATGGGCAAGGAACTAATGACATGCTGGCCGGCAACAACCAAGACATGGGGACAAATATTAATCAAGCTCATTAGATTTAATGTAGCATTACAGTCCTCAAAACACTTAACAGGAATGGGttgcaattttaaaatttactgtTGCTCTCATTATtagtgttgttattatttaatattttttgaagTAAATGAAAAGACTACACCTTCCTATGGGAGATACTACATTAAATGagcaaattaataaattaaatgaatggtAAATTATTGCTGttaatatatgcatatatatttttagccaATTGTGTTCAAAGGGTTCTGGGTGAAAGGATGGGAATATTCTCCTTGGTATTTGACAAGTACTATTTTTGGGGATGACTgcctttttataaatatttttttaagattttaaatgcataaaattaaagagaaaaacgtGTTAACACAATAGatctttgttgtttttcctccaTTCACATCCAATATTGTGCCCATTTTTGAAAGTGTTAACTACCATCAGCAGTTACTGATTAACAATAAGaattgttaaattttatttattaccttCATTTTTGTAGACAGCTTAAATCCCTACAGTGGCCCCTACTGGACAACTATTGGCATATTCTGTTTAAAGTGGCTGCAATTTGTCATGTGGGTTGTTAGCAGAGTCGAGCAAGAAAAGGAtggagatatttttttttttttttttttatatataaataatcctGTAAGGGGAATATTTTGGGCTTTATGTTTTGAGTGAAAATTGCAGTGTGTCCCTTTTTTCCGCTGATGGCAGATTGCATGGGATACTTTTGTCCTTCTATGCATGTCACGGTTTTCCCACTACCATAGACCCTTGTCCTTTGAATGTGTACTGCATtctatcattctgtctctctgtctttttataATTGGAATGGTACTAGAACTGCTGACACTACAGACATGCTATAATCATAGGACACAGTGCAGTAATTTCTACCATGAAGCTTAAACTCTGATGAGGGAACTTTGATTTCTCAAGGAAGTAATCTTAATGCGCTTTTGCCATCTCAATGACTCGATGTCCTCACTCCTCCTCTGTCCAGGAAGGAACTATTTTCTGACTCTTCCCCTTTTGATGCTCAGAACTTTGGGATTTCAATCATCTTTTTCCTACTGTGTAAAGAAATTCTGGACTTAAatactttttataataaaatgtacatggAACTGGACAGTCAAGTCATAGAATTCGCTATTTGTCTCCTTCTGATTTAAGCTCAAGGGAGTTGAGCCTTTAGGGCAGCTTGGAGCACGCAGGCTCAATATGAAGTTTTGCTATAAGATTTCATGGGTGGGATGTTTCAGACCAATACTAGCAGTTTTATGTGTAAACTAAagtttggaaattttttttttttttttttttttttacatataaataagaaaatgattGTGTACTAACAAGGCACTGCTGGTTCTCTTTGTCTTTATgttgcacacaaacacactgtggaGGGCACCTACTGTCCATTTCAGATGGAAAAagactggtttaaaaaaaaaaaaaaaaaagaatatgaaagACAGCAACCCTATTCTAATTTCCTGTTTTCCCCACTTTTTCACAAGTTTAACTGGTAAAGTTAGCACGACATGACCTGAACAGTGGCAATATGGCGTGAgacttattttataaaataagaaaaatacttgtcttttttatatatatacatatatatagatagatatattatttaatttaatttttgaaaaaataaaaaacttgaaGCAACAGGAGCTgataaattacagtttttaaaagatGTAATGGTAATGCAAAATGACACTGTCATACCTTATACATCCCACTTGGGGACTGCTGAGAAATGTTTTGATGAAATGTCTTATACAtgcatatatgaatatatacataaagatCCACTGTACAAACCATAGTAACTGAACATATTTTTGTTCTGGTTCTTTTTTGTGGGGtgctttttgcttttgtttgtttttggaggGGGGAAAGGATATGGACTGGACAAAGACCATGTGATTTGTTAAAGTTTTGACCACTTTTCTCTTGCTAACACTTTTTGGTGCTTGCTGAGAGGAGCAAAAATATTTGATGCTCTGgtttcaataattttttttaagttatttttgtggtcagatttttttcaattatttaattGTACATTAAAAGTATGTTTGTACCAATGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230242 lncRNA upstream 43192 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 84323 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 170749 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 195121 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 227617 11062164 ~ 11063682 (+) True G194365
TU230438 lncRNA downstream 63824 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 278255 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 282893 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 299752 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 404260 11718897 ~ 11719113 (+) True G194748
XM_026915923.2 mRNA upstream 12644 11273129 ~ 11278655 (+) True chadlb
XM_026914613.2 mRNA upstream 18853 11265411 ~ 11272446 (+) True rangap1b
XM_034309360.1 mRNA upstream 43086 11233590 ~ 11248213 (+) True si:ch73-139e5.4
XM_034309081.1 mRNA upstream 59552 11228150 ~ 11231747 (+) False csdc2a
XM_026915301.2 mRNA downstream 24380 11339017 ~ 11343084 (+) True desi1b
XM_026914507.2 mRNA downstream 40568 11355205 ~ 11374268 (+) True shisa8b
XM_026914508.2 mRNA downstream 40568 11355205 ~ 11374268 (+) False shisa8b
XM_026914509.2 mRNA downstream 40568 11355205 ~ 11374268 (+) False shisa8b
XM_026915267.2 mRNA downstream 99491 11414128 ~ 11420071 (+) True gna13a
trnaq-cug_16 other upstream 5031 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1226673 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1656232 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1777464 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1778668 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 1158046 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2168664 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2168664 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5541133 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6262646 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile