RNA id: XM_026914607.2


Basic Information

Item Value
RNA id XM_026914607.2
length 2143
RNA type mRNA
GC content 0.46
exon number 7
gene id si:ch1073-272o11.3
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8514561 ~ 8521374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGAGGAGTGTATTACCAACTCGGGGCTGTTCAGTACCGGTACATCTTGCTACCTCAGACTGACGCATCTTTATATACACTCAAggcttctccatcagtaagaGTTCACACATCATTAGACTGGTGATAAACTTGGCACGGATTGCGTCAGAGCATATCTGAGGTACAGAGAGCACGCCACGTTGATCTCCTCCTTCCTGCACtcctgagagagtgagagagggagcgagagagagagagagagagatgcatgcgagagagagagaaagccagCGTCCTGTGTTGAGTGAACATACTCAGAATGCTTACAGACATGATAGCAGAGGAGGAATTCGAGGTTAAAGAGGAAGAACAGTGGTATGACCATCGAGATCTGGAGCATGATCTTCATTTGGCCGCTGAGCTGGGCAAAACCCTCCTGGAGAGGAATCATGAATTGGAGGAAGGTCTCCAGCAGATGTACACCACCAATCAAGAACAGCTACAGGAAATTGAGCATCTATCTAAGCAATTGGAAATGCTCAGGTCAGTGAATGATCAGCATGCTAAAGTCTATGAGCAGCTAGATGCGACTGCACGAGAACTGGAAAAGAGCAACCAAAGACTCGCCCTGGAAAACCGTTCCGCCCAGCTTAAGATCGAGGGGCTTACAGAGACCATAAACGGGCTGCAGGGTCAGGTGGAGGAGCTACAGAGGGAGATTGAGAAGATGACACCAGATCTTCTAGAGCCAGAGAAGCCAGACTTTAGCCAATCAGACAAGAACACACCCAATGAGTACTCTGTATCTGCGAGCACTCCCTCTCCAGAGGCAGATGAGTGGGAAGAGGAAGAGCACACAGCCCTTTTGCACTCAGTGCACTCACTACAGGCCCAGCTGGATTTAGAGCGAACCCTAAGAGAGACTGCTGAACAGGAGGCCGAGGCTCTGGCCCGAGAGATCACTGAGCTGGAGCCACGTGTGACTCTGCTGGAGGGCTATAAGGCTCGTCTGGCTGAGGTAGAGGCTGAAGTTGAGGAACTACGGCAGCTGTTGCGTTCCGCAACAGACTCACGCATGCTTCCAGGCACTCTGTTCTTCCCTGCAGAGGAGGAAGTGAGTGAGATGTGGGAGACAAGGCAAGTGCTGAAGCGCTGCAACAGCGAGAGGGAGCTGCTGGAAGCTGGCAGCAAGGATGAGGAGCTGAGGAATGAAGAACACACTGATGCCTATAGGGGGCATTTAGAGACAGTGAAGAGCCATGGCATATCACTGCTAAATGAGGTGGATGCACAGTACAACGCCTTACAGAGAAAATACAATGCACTCCTGCGCCGCTGTGAAGGTGGTTCACAGTCACAGTGTGACAAAGCTGTGCAGACAGCCACAACCAATCAGCACTCGATCCTAAATCCAGTTAAACACACACGTTCTCAGGACTGTGCTCAGCTGCCTGAGTACAAAACGCTTTTCAATGAGATTTTCACTTACATCCAAAATAGCAAAAAGGACTTAGAGATGAACAGAGCCAAGTCAAGTTAAATGCAGACGAATACTGTGAATTTTCCATGTTCAGCTTCCCAGGACTGTGAGATTTGTCCTCCAAAGGAATTGCCAAATCTCCCAGCAGGCATCAGTAATAATAAGGCAGTGAGGGGACTGTCTGAATAAACTGGAATCGCAATAAGGATATTTATAGCACAGCCAAGCTAGAGCTTCAGATCTCATCTTTTATTGCAGATATAGACCTAACTGAAAACGATTATTTCCCTTTAAGTCTTTATGTGCCGTACATGACAACTTGTGATCTTTTGTGAtcttttttgcatcatttttgctcattattATATGTACTGCTGATGTTTTAATGGTGCTGCTACAAAACGTATATAGAAAGAGTTACACTTTGATATAGAGTTTAAGAAAACCTTTGTCTGGCTTGTACACTTCTCAGAGGTCACAATAGTTCTACCCGAGGCTCAGATATCAGCAACGGTcagtttttgtaaattttgtatGGTCAGGTTTTGTAAATTTATCAGGTTTATGGAAACACAACATATTGAGCACATAgatatcacacacatacacatcttcTTTATCTTCATAGACAATGTGAAACCAGGACAAGAAAACTACCAATTAATAAATCTTAAGCCGTA

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228465 lncRNA downstream 1091 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA downstream 29383 8483608 ~ 8485178 (-) True G192954
TU228459 lncRNA downstream 59258 8452197 ~ 8455303 (-) True G192948
TU228447 lncRNA downstream 78477 8429304 ~ 8436084 (-) True G192937
TU228380 lncRNA downstream 130962 8379227 ~ 8383599 (-) True G192881
TU228680 lncRNA upstream 406607 8927981 ~ 8928648 (-) True G193138
TU228880 lncRNA upstream 633068 9154442 ~ 9156287 (-) True G193315
TU228886 lncRNA upstream 636817 9158191 ~ 9158569 (-) True G193319
TU228882 lncRNA upstream 638060 9159434 ~ 9184089 (-) True G193316
TU228901 lncRNA upstream 680618 9201992 ~ 9202672 (-) True G193334
XM_026915448.2 mRNA downstream 64099 8447927 ~ 8450462 (-) True snu13b
XM_026915273.2 mRNA downstream 68882 8440187 ~ 8445679 (-) True crym
XM_026914925.2 mRNA downstream 212142 8301334 ~ 8302419 (-) True LOC113527290
XM_026914611.2 mRNA downstream 231699 8269591 ~ 8282862 (-) True adam8b
XM_026915593.2 mRNA downstream 253451 8209345 ~ 8261110 (-) False exoc6
XM_026915557.2 mRNA upstream 153355 8674729 ~ 8678396 (-) True wfikkn2b
XM_026915886.2 mRNA upstream 171885 8693259 ~ 8746106 (-) True abcc3
XM_026915887.2 mRNA upstream 171885 8693259 ~ 8746106 (-) False abcc3
XM_026915888.2 mRNA upstream 181137 8702511 ~ 8746106 (-) False abcc3
XM_026915323.2 mRNA upstream 326288 8847662 ~ 8857748 (-) True si:dkey-94l16.4
trnal-uag_3 other downstream 39221 8475259 ~ 8475340 (-) True trnal-uag_3
trnap-agg_9 other downstream 56165 8458327 ~ 8458396 (-) True trnap-agg_9
XR_004579320.1 other downstream 1920171 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2738541 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2900607 5611120 ~ 5613954 (-) True G191430
XR_004579166.1 other upstream 326288 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 555415 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 555744 9077118 ~ 9077199 (-) True trnal-uag_4
trnaf-aaa other upstream 556192 9077566 ~ 9077647 (-) True trnaf-aaa
trnaa-cgc_2 other upstream 557612 9078986 ~ 9079057 (-) True trnaa-cgc_2

Expression Profile