RNA id: XM_034309533.1


Basic Information

Item Value
RNA id XM_034309533.1
length 2175
RNA type mRNA
GC content 0.36
exon number 6
gene id si:rp71-1c10.8
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12484134 ~ 12487553 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCCCCCTCCACCCTCACGCCCTGGTCTCTGTAATAACACTGCCAATTAAGATAAATGAAATCCAAACTAATAGAGGTTCATTATGGTAATGTGGTACATGTCCCAGGGTATATAAAAGACAGACATTCACTACCCTGGACTCATACAAGCAAAAGCACAATCACATCACAAGTACATTTACTCATGTACTACCTATTTGCCTTGATATAAATTACatacataattttaaaagttaattaaaggTGAGATTCACTCTCACCTGTCTTGCATCAAGGATTTTAACTGCGACATTTTTATTGACTGGAAGTAGAGCTCTCTTTTAAAAGATGCAGATGAGCTATATGCTGttttgtgtctctttctgtgtcctGTCCCCTCAACTGTCAAGGACCCATGGGATGACCCTTAGGGGTCTAGAGAAAAGAGGATGGACACTGAATAGTGCTGGATATCTACTTGGACCTTCACTTGATTTTCCTAAATCACCACATCCAGATGCACACAGAACTCTTACTGTACGACATGGAGCCAGTGTGGGCAAGCGGGACAGCACGGAGGACTCCATCCTGCCAACACATCAGCCTTCATATAGATCCGTTACAGATGAGTCATATCTGCATGCACTCATGGAATTATTCATGTATCTACGCATGAAAGATGATAAAAGCATTGAAGACTTGATCAGCTCTACATTTACTGATGACGTGACACGATAGAAGAAACGGCCTTAGTTAACCATTTGCACTGGGCCAACACTTCTCTCATCATATTCATTTTACTTCTCTCATCATATACATTCTGACTTTAAATTATAAAGTCTTTCGTATGACTCTCACCTTTGCCGAGAAATTCACAGCAGgtatttaaattacattaaaaatgaaatgcaaatgaagCTTTTGAGCTCTTTTACTCCTTCTTTATCAATGGAACTCTAATAATAACCAGAGTAGAAGGTGCCAGTTATATGTTAGAAATCAACTCTCATTACCCATATCCACTTGTTTTCTTACATCTACCTTAGAATGAATGCAGTTAATGCAAAGCTGTTCTCATATCTACCCTGATAGCACATCAGTCTGTCTgcatacaaaacaaaagaaaaaaatatataataatgccACAATATTGATATGGTGTATGGTATATATAtggtaaatatatacatttaacacATAGTGGACCTATGTATAGCTATGGTTTGGCAGCATGAAACCATGCAACCTTTCTtaattacataaaatctgtCTTAATTAGataaaattatgtaattacATAGTGCACAGAAGTGGACATATGTATAGATGACGTTTTGCAACATAAAACCATGGaacttttctttattaaatgaaaCGTGTCTTAAATACATAAAACTATCCTCAGATCGGAGTATTTGATCTGAAATGACACATGGTTTGGATGCTGAGGAGATGTCTTTTGATGTGTGAAGAGTGTCTGTATGAGAAACTGTGCTTATTTTAAAAAGGGGAACAGGGTATGCTTGCTTGACTAATACAGCGTAAAATCATAGTTTAGAACGGGATGGTTTAAGCATTTACCAAATTAGCAAATGCGTTTTGAGGGTCACGTCATTGCTTAGACTAGATAGTTCAGCAGCATTGTTCTgttcaaattaaatattaaaatagccATGTACATTTAATTGATTTACATGCTccaccatgtaaaaaaaattctgtacatTTATCTACTTACTTGATTAATTAATCTGATTAATGTCTTATATTAATGCTTAGTTGCCACTATTTGGTACAACTTTGGTACAACCAGTAAGTGTACTTAGGTGTATTTAAGTGTACTAAATATGCTGCCGTACCTTTTTActtctatatttaatttaataataaatacatgcCAGCTGCTCAACTTGCTGTTGGCTCACTGTACCGGAATCTGTGTAAATCATGTCAACCCTTTTTGGGATTTGACCAAAGAATACatccatatttttaaaatttacatttatagattcatttacaaacactgtgcaaaaatttacaaatacatCAGCATTAACTAACTGGGCTCTTGATTATGTTAGCACTCAATATTAATGTTTGGGTGACTGATTTGATTTCCTGCTCTTTTAGCTATTCTGTCTGTATTACAAATGTTTGTTTGTGCAATGATTGTGCAATGGACCTGTGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579205.1 lncRNA upstream 30456 12451893 ~ 12453678 (+) True LOC117598562
TU231049 lncRNA upstream 109854 12374010 ~ 12374280 (+) True G195084
TU231048 lncRNA upstream 112849 12371056 ~ 12371285 (+) True G195083
TU231012 lncRNA upstream 234379 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 308015 12174394 ~ 12176119 (+) True G195016
TU231214 lncRNA downstream 62581 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 155715 12643268 ~ 12643526 (+) True G195287
TU231306 lncRNA downstream 170552 12658105 ~ 12658323 (+) True G195301
TU231526 lncRNA downstream 356772 12844325 ~ 12844561 (+) True G195512
TU231613 lncRNA downstream 471387 12958940 ~ 12963243 (+) False ablim1b
XM_026915699.2 mRNA upstream 10151 12472679 ~ 12473983 (+) True LOC113527673
XM_034309496.1 mRNA upstream 10151 12472691 ~ 12473983 (+) False LOC113527673
XM_034309502.1 mRNA upstream 15950 12466585 ~ 12468184 (+) True LOC117598642
XM_026915683.2 mRNA upstream 17700 12462862 ~ 12466434 (+) False znf668
XM_034309353.1 mRNA upstream 17700 12463111 ~ 12466434 (+) True znf668
XM_034309464.1 mRNA downstream 8115 12495668 ~ 12502869 (+) True valopb
XM_026914694.2 mRNA downstream 35382 12522935 ~ 12544716 (+) True gabrz
XM_026914691.2 mRNA downstream 75944 12563497 ~ 12575544 (+) True adgra1a
XM_026914693.2 mRNA downstream 83725 12571278 ~ 12575544 (+) False adgra1a
XM_026914692.2 mRNA downstream 83852 12571405 ~ 12575544 (+) False adgra1a
TU231182 other upstream 10395 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 1197866 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2419508 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2849067 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2970299 9513764 ~ 9513835 (+) True trnaq-cug_15
XR_004579176.1 other downstream 995748 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 995748 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4368217 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5089730 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 5667598 18155151 ~ 18158629 (+) False pde6gb

Expression Profile