RNA id: XM_034309437.1


Basic Information

Item Value
RNA id XM_034309437.1
length 3093
RNA type mRNA
GC content 0.42
exon number 9
gene id zgc:171971
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7435509 ~ 7442712 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTTAAACTTGGTCACATGATCGAAGGTTAGCAAAGATGCGCGTACTAGGAAGCTGTGAGAGTTTAACTGTAACAAAGATGTTATAAAGGTAGCAACAAACACAATGGCAGAAGGTGGTGATGGAGAACCTGTGGCCAGTTCATCTGGGACTCTGCGTCCGTGTTTCTCTTTGGGAAGAGGACTCGCAGGACGCTCTTTACTGAATCCTCCACCTCCGGGCAGACTCACATCCCTGCGCTCCAGAGACCTGACACTCGGGGGGTATAAAAAGAAAACATTTGTACCAAACGTCCACTCCATTCGTAAAAGCAAAGACGAGTTAAAGGAGGAGCCTCGTACTGCGCcgaagaaggagaaaagagaaagggaggacaggcagagagagcgcAGGCGGAGAGAGAGACCGCAGACTATTCAGTCGCACTCCATTTTTGAACAGGGTCCTGCAGACACCTTCAGGAAAACAGGAAGTTGGGGGACCACAAATCTAAGCGACTATGATCCTTCAGTTCTTACTAGGAGTATTAAAAAGGAGAGGAACATTCCTGTGGATGATGACGATGGAATTTTAGAAAAGCTTCAGCGAGATGATTTCATAGATGACCCTGGCCTGAAAAATGATCCCAAGCAGACACCAATAAGACTTCCACTGCATCAGTCGTTCGACTACTTGGCGACAGAGACGTCGACGTCTTTAAAAGAAGCACTGTCTGATCACACTTGTTCAAATTCTCTAAAAACGCACGAGAGGATTCCATCACAAACATGTGGAACTTCTGCAGGTCCTCAGCCGCCGAGTGTCGGAGAGCTTTTCCAGCAGTTGAGCGTTTCAGAGAAGGAAGAGCTTTTATTCATCCAGCTTCCCGATACCATACCTGTCTCCATAAAAGCTCTAAAAGgtgaaaaatctgtgaaaaaatCTGATGCTGAAGACAAGCGTGCCTCTCATATCAAAGCACAAGATCCAGGGGAGAAAGAGGCTGCGCCTGTGCTCTCGGACTTCACAGAAGGATTCATAGGAAAAGTGCAAATTAGGAAATCTGGCAAAGTACAGCTAGTCATAGGGGACGTTACACTGGACGTGTTGGAAGGAgcagctttttcttttctgcagCAACTCGTGTGTGTGCGGCTCACAGAGGGTCTGACTGGCGACATGACGGTGCTTGGGAACGTCAAACACAAGCTGGTGTGTTCCCCTGACTTCGAGGCTCTCCTAAAAGGGGTCAAGGCTCCATCACACATCCAGCCGCTCTTAAATACTATTCAGACGTGATGAGCTTTCCAGGCAGCCTGTAAAGTAAAGTTGCCAGAGGATGTTTGTAATGATCATGACTGATTTGCAGAAGATAAGTGCTCTCTGTATACATTACAGAGATGGGATGCTATGTATGCTATACTACACACTGTTACCACACGAGAACTGTTCCACACGCATATATAACCTGTTACATGGCACGACACTCCACATGCCTATATGACGTATGTAGACTATAGCTGTGTTAAGAACACAACAGCCATCAGACTCATCGCTTCTGTGACAAGCAGGATATTTTGAATGTCGTATTTTATTATTCACGTTTTAAACTCAAACTTTCAAACGCAAAATCTTGATTTCAGCTTGTCAGGTGACTGTAGAAAATGATTGCTTCTTGGAGTGTCTCCTTGAAGAAACAGAGGACAATTCAGTTCAAGAGGACAAGACAAAgcagaacatttcatttctcacAGTATACGATGGAATCTTTTAACAGGTCTATTTGCACACTATGCATTAACTTACAGTCCTTTTATGGTAGGGGAAAGATGACATAAACCAGGGCTTCCCTAACTAGGGGTCGTGACCACACGTGGGGTCGCttaatttacaaatggggttgagagagaaactcacagtcccctcatttattttaaattaatattacgAATATAACTGCAAAAATGTATTCTGTTACTATTTTGTAATGTTCCTCTTTCTAAAGAGCAACATTTGAATGAAGGTAATTATAGCTATCCTGACACTGcattagagtaaaaaaaaaaaaacaaaaaacaaaaatagatcaATTTCTCAGTCCAGTACTACTTCCAGTAGTTCCTCAACATGATGGCATTACTCTGACTCAGTGGAACAAAAGAAGTCAATTAAACAGACATCGAAACATTTATTGAATATGGATTTACAGTCAGGATGGTGAATAATGAACCCAACAGGAGAAACCAACAGGCCTGATGTGTGGCGGAGTTTTGGTGCATTGCAAAAACAGAGTATCCCCATATTTGTTTGCGTGCACTGAAAATGATTGCAAGCTGCTATCAGTATAAAGCCTAATTCAGTGCTGTTGCCtgcattaagtaaggaataacacgtGGTGGTATAAGAGGGAGAACATGCTTTGTGCATGCTGTTAAAAGACAACAATACACATCATgatggtagcagtaactctgctccCAGTCGGGGAgctatcacaccaccccagtgtgggttattttcctataataccACGCCCCCtcacgttttattccttacctatcGTTTGAAGCTGGACTTGACGGCGGAAATGAGATGCACCctttcaaacacacatgctgacTTTTcgatatataaaaatataagttCACGCTTCCCACTAgacagtgcaaggaatattcctttggtttttattCACACGCGTTATACATATagtaaaatgttcaaatgtaaaaatagtcctaaattataaatctggaataaaaaaTGTAGAGTAGTCAAGGCTTGAAGAGTCAGAGAAAAGTCATAATGTCTATTTGGGGTCCTTTGGCCAAAATGTTTGTGACCCCCAGGTATAGTCTTTCCAGATACAGAACCACACAGTCCGTATAAAATAACAGATTTTTATATCACACAGATACACTCCAATTACATTCCCACTTTCTCATAATCAGTgtaatactgtacatgtttgaGTTTGGGTTACATTGTATAGATACTTCATGTTGCTTGTTTCTTTTGTAGAAAATGTAGATATTTATTAAGTAAATGTACGACACAAAACATGGCGGCTGCGATTTTTAAGCATGATGTACAAGTGGATGTGTtctacaaagc

Function

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227790 lncRNA downstream 6626 7428587 ~ 7428883 (-) True G192437
TU227786 lncRNA downstream 35146 7400027 ~ 7400363 (-) False ipmkb
TU227735 lncRNA downstream 122622 7228390 ~ 7312887 (-) True G192385
TU227404 lncRNA downstream 620074 6813165 ~ 6815435 (-) True G192074
TU227943 lncRNA upstream 138646 7581358 ~ 7583165 (-) False ccdc6b
TU227946 lncRNA upstream 186599 7629311 ~ 7630373 (-) True G192545
TU227929 lncRNA upstream 279293 7722005 ~ 7740008 (-) False ank3b
TU227921 lncRNA upstream 279293 7722005 ~ 7767502 (-) False ank3b
TU228003 lncRNA upstream 397651 7840363 ~ 7841460 (-) True G192583
XM_026915835.2 mRNA downstream 7675 7421966 ~ 7427834 (-) True ube2d1b
XM_026915386.2 mRNA downstream 17131 7400000 ~ 7418378 (-) True ipmkb
XM_034309522.1 mRNA downstream 203434 7049810 ~ 7232075 (-) False pcdh15b
XM_034309325.1 mRNA upstream 104351 7547063 ~ 7560750 (-) True fam13c
XM_026914557.2 mRNA upstream 131364 7574076 ~ 7579872 (-) True slc16a9b
XM_026914606.2 mRNA upstream 138638 7581350 ~ 7595881 (-) True ccdc6b
XM_034309148.1 mRNA upstream 158506 7601218 ~ 7767512 (-) False ank3b
XM_034309143.1 mRNA upstream 158506 7601218 ~ 7739995 (-) False ank3b
XR_004579320.1 other downstream 841119 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1659489 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1821555 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1962039 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2133304 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 1015615 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1032547 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 1404950 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 1634077 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 1634406 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile