Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026914636.2 |
| length | 1099 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 1 |
| gene id | ch25h |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 10077017 ~ 10078115 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006633 | fatty acid biosynthetic process | biological_process |
| GO:0016126 | sterol biosynthetic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| id | description |
|---|---|
| K10223 | CH25H; cholesterol 25-hydroxylase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU229298 | lncRNA | upstream | 250153 | 9825427 ~ 9826864 (+) | True | G193646 |
| TU229297 | lncRNA | upstream | 252549 | 9824047 ~ 9824468 (+) | True | G193645 |
| TU229153 | lncRNA | upstream | 296062 | 9694909 ~ 9780955 (+) | True | G193544 |
| TU229145 | lncRNA | upstream | 411501 | 9663930 ~ 9665516 (+) | False | arhgap23b |
| TU229133 | lncRNA | upstream | 423757 | 9652172 ~ 9653260 (+) | True | G193542 |
| XR_004579148.1 | lncRNA | downstream | 66238 | 10144353 ~ 10148786 (+) | True | LOC117598497 |
| TU229556 | lncRNA | downstream | 146587 | 10224702 ~ 10226319 (+) | True | G193842 |
| TU229539 | lncRNA | downstream | 246841 | 10324956 ~ 10329985 (+) | False | G193828 |
| TU229536 | lncRNA | downstream | 247525 | 10325640 ~ 10336247 (+) | True | G193828 |
| TU229537 | lncRNA | downstream | 254791 | 10332906 ~ 10336247 (+) | False | G193828 |
| XM_034309422.1 | mRNA | upstream | 14778 | 10053473 ~ 10062239 (+) | False | slc16a12b |
| XM_034309423.1 | mRNA | upstream | 14778 | 10053473 ~ 10062239 (+) | False | slc16a12b |
| XM_026915284.2 | mRNA | upstream | 14778 | 10053474 ~ 10062239 (+) | False | slc16a12b |
| XM_026915283.2 | mRNA | upstream | 14778 | 10054015 ~ 10062239 (+) | True | slc16a12b |
| XM_026915398.2 | mRNA | upstream | 23823 | 10043909 ~ 10053194 (+) | True | pank1b |
| XM_026915769.2 | mRNA | downstream | 19254 | 10097369 ~ 10101788 (+) | True | acta2 |
| XM_026915532.2 | mRNA | downstream | 40773 | 10118888 ~ 10124842 (+) | True | ankrd22 |
| XM_026915533.2 | mRNA | downstream | 41072 | 10119187 ~ 10124842 (+) | False | ankrd22 |
| XM_026915217.2 | mRNA | downstream | 57801 | 10135916 ~ 10166915 (+) | False | rnls |
| XM_034309212.1 | mRNA | downstream | 57802 | 10135917 ~ 10166915 (+) | False | rnls |
| trnal-aag_8 | other | upstream | 12391 | 10064545 ~ 10064626 (+) | True | trnal-aag_8 |
| XR_003402888.1 | other | upstream | 441950 | 9634877 ~ 9635067 (+) | True | LOC113527805 |
| trnaq-cug_15 | other | upstream | 563182 | 9513764 ~ 9513835 (+) | True | trnaq-cug_15 |
| trnaq-cug_14 | other | upstream | 564386 | 9512560 ~ 9512631 (+) | True | trnaq-cug_14 |
| trnaq-cug_13 | other | upstream | 564777 | 9512169 ~ 9512240 (+) | False | trnaq-cug_13 |
| trnaq-cug_16 | other | downstream | 1208082 | 11286197 ~ 11286268 (+) | True | trnaq-cug_16 |
| TU231182 | other | downstream | 2394568 | 12472683 ~ 12473739 (+) | False | LOC113527673 |
| XR_004579176.1 | other | downstream | 3405186 | 13483301 ~ 13558513 (+) | False | tcf7l2 |
| XR_004579175.1 | other | downstream | 3405186 | 13483301 ~ 13558429 (+) | False | tcf7l2 |
| TU234137 | other | downstream | 6777655 | 16855770 ~ 16863495 (+) | False | anapc16 |
