RNA id: XM_026914643.2


Basic Information

Item Value
RNA id XM_026914643.2
length 2869
RNA type mRNA
GC content 0.36
exon number 5
gene id LOC113527122
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21062462 ~ 21069464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACACCTCCAATTCAACACAGGAAACTGAAACCGTTTCCTCCATTTGTCAGTGAAATGTTTTAGAAGAACAATGAACACCAAGGGCAGTTTTACAGGAATATTCCTCTGTTTCCTGACTCTATTTACCTTAACAGACTGTAGCACATGTCAGACCAATATATTAGAAGGGGACAGTCTCACCTTTCAACTGACTGACAAGCAGCTTAAAGATAATGATCGATTCActataaaaaaagatgataaaatACTAGTCCCCAAAAGGAATAGGAAACAAGACGGACCAGGGATTGTGAAAGATAAGTTCCTGGAGCTCCAACCTGTGAAACTGAGCGATTCTGGGACATACAATGTTGAGGTTTTTGATGTGAACGGCATCAGAATAAAATCTCACTCAGAAAGCGTCTGTGTTTATGCAAAAATCCCCAAGCCAAGAGTGAATATTACATGTCAGGATGAGAAGGTTGACTTAAGATGTGATGTTGAAGGTGGCAAAGATCTATCTTTCAGCTGGTACAAAAATGGGAAAGATTTAAAGAAGAATGTATTAAACTTCTCAACAAATATTGAGGAGAACAAATCAAAGTATACATGTACTGCACAGAATCcagttaataaaaacacaagtgaTCCAGTGGAAGAAGCATGTTTCAAGCCTGCTACACTCTTTGGCTTTGACCTTTGGATCATGGTGGGCATCTTAGCTGGTGGAGGAGGTCTCGTACTGGTATTGATAATTGTGCTGGTGACTGTTGCCTGTCGTGCCTGTAAACGCAGAGAGAAACAACAGCGAGATGAAGAAGAGTTCCGACTGAACTACCTCAACACCTCTCCACCTCCTGGTCAACAAAAATCAAAGCAAACAGCAAGAGGTCAGCCAGCACCTCCAGAACCCTATGATGATGTTTCTGCCCAGGAAATCCCATGTCAGGCCGAACCTAGACCCAGGAACCAGCAACGCGCTCGGCCTCCACCACCTCCGATAGACGATGAGGAGGAACAACCTCCACCATTACCCCAACCTAGGAAAAAGGCACAGGTCAGAAAGCGTGAAGGACCAATGTGATGGAGGAGCGAGTACACCAGTCAGGTGAAATCATCGAAttctatttatatctgtatgtatgaatatatatgaaGGAAATAAGAGTGataataaatgtacaaataataaacataacatttcaGCACTTTTCTTGCATGTTTGCTTCGCATATatccatacatacataaataaatgcattttatataatattcatCGCCATTAGAACATAGTAAAGAGAATTGAATCAGCTTGGATTGCCTTCCATGAGCTCACAACCTGTCAATCCTGTAATATTAACTGAATGAAAAGAATTTTGTAAAactaaatgaagaaaaaagcagaaatccTTATTAGTGATAAGAGATAGAGGTTTTATTAGGATAGGGAATTTGGCTGTACTAGAAAAATTCTGAGAGTATGTTTGGGTGTAATTCCCAatttaacatgaacattttataaaataggaaaaaaaaaaatcaaatttttttatttaagaaaccGCAAACCTTTGCTTTCTCCTCATGCTGCAGCATCCTAAGAAACCGACCCATGGTGTTGTTTTTTCACATCTCGTCTAATGCAACGCTTTGTTTGGAAGGTACCAGAAACCACAATAGACAGATTGCAGCTAGTCAAGATGTTGCAGTCAAGAGTAACAACACGTACAATAAGAAATCGAGAACAACTTGCACCTCTTTCAGCATCATTGCAATGGCTATCTATTTCTTTTAGAACTGATTTTAAGATTTCCTTACTGGCTTATAAAACTCTCAGTAGATTAGCATCTCCATACATGTCTAGATAACTCTGTTCCAATTTGAGTTTTAAGGTCACATACTGGCTTGTTACATgctcaagttaaaaaaaaaaggggtgggTGAGGGGcagggggaggaaaaaaagactgCGGCAGCACCTGAAGCAGCTTTCTGTCACTATACAACAAAGATGTGTATAACTTAAACAATCAGTGTTCAGCAGAAGCATATCTTTAATCAATTAAAAGAACAACTAATATCATTAGAATTTTAATAGCAttgttcattctttatttttattttcctctataTTTATAATCCTATGTTAATTTCTTTCTATTAActattttaatgtttgttttgctgtattttttgaaatttattattattacttattattacttattattttgtaaaCCCTTTACTGAGATCGTATAATTTGCCTGGATGTACACATCTTACTTGAACTGAACTGTTCACTGATTCAGTCAATGTTCAGTTGTTATGGACAGTATGACTGACTGAATTGAGAGATTTTACATAAATTTATCTAAATGTAACTTACTTGGTATATATATGGCTCTCACACCACACAGTTTTAAAGGCAGATAGCAAAAACCCACTAAACGACACCTAGTccgctttttttttatcatcgtCTACTCATTTCCTGTGTGTGGGAGATACAAAACTGCaagagtttttttgttgttttttttttttttgtttcacaagCACACCACTTTGAACaccattttcaattttattttagcaACAGTAGTGTTGTCAGTAAAGctatttttaaagacttttagtacatcttgtgtttgtgtattcttAGATTTTCTCCTTATATTAAATCTGTTTTCTTGTGCATTTTGTCCATATATTGTCTATAAAATATGACTTTGTCTGCCTGAAGTCACTGTAGCACAGAgaagtgtttaaatgtgagATTATGAACAACTGTATATTCCATCATGGCCTTAAAACTGGAAATTAGACAAGATAAGACATTATGAAGGCAACATACctgattatataaataaattcatgaaatTCATGGAA

Function

GO: NA

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236496 lncRNA upstream 467018 20595241 ~ 20595444 (+) True G199796
XR_003402864.2 lncRNA upstream 810988 20234816 ~ 20251474 (+) True LOC113527335
TU237058 lncRNA downstream 314612 21384076 ~ 21386033 (+) True G200325
TU237068 lncRNA downstream 387955 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237153 lncRNA downstream 540790 21610254 ~ 21610457 (+) True G200418
TU237157 lncRNA downstream 570230 21639694 ~ 21643654 (+) True G200420
TU237170 lncRNA downstream 583767 21653231 ~ 21654736 (+) True G200430
XM_026915237.2 mRNA upstream 54077 20979187 ~ 21008385 (+) False lzts2b
XM_026915238.2 mRNA upstream 54077 20992363 ~ 21008385 (+) True lzts2b
XM_026915458.2 mRNA upstream 144438 20912718 ~ 20918024 (+) True hhex
XM_034309461.1 mRNA upstream 308694 20663694 ~ 20753768 (+) True fmn2b
XM_034309462.1 mRNA upstream 308694 20663694 ~ 20753768 (+) False fmn2b
XM_026915607.2 mRNA downstream 43012 21112476 ~ 21120953 (+) True tekt3
XM_026915385.2 mRNA downstream 70393 21139857 ~ 21152926 (+) True pmp22b
XM_026914739.2 mRNA downstream 387927 21457391 ~ 21500929 (+) True si:ch211-216b21.2
XM_026915925.2 mRNA downstream 543494 21612958 ~ 21639584 (+) True unc13d
XM_026915418.2 mRNA downstream 683877 21753341 ~ 21777831 (+) True kcnj16
XR_004579324.1 other upstream 1495778 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 2250200 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 2250950 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 2552303 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2903833 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 933360 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 939047 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 1728717 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 2136202 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 2254609 23324073 ~ 23329571 (+) True G201214

Expression Profile