RNA id: XM_026914669.2


Basic Information

Item Value
RNA id XM_026914669.2
length 2245
RNA type mRNA
GC content 0.42
exon number 4
gene id tmem101
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5289712 ~ 5294398 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGGAGAAGAAGACATCACTTCCGCCTTCAGTAATCATGGCGCCTCCGAGTAGAAAACAAGTGCTGAGGTTCATCGCGCAGTTCGGAGCTTTTATTCTGACCCGGTTCGGTTTCTGGAACTGCTTCAGCATGCTCATGCTTTTTGCCGAGCGGGCCGACGTGAAAAGGAAGCCAGATATCCAGGTGCCGTACTTGTACGTTGACATGGCAGCAGCAGTGTTGTGTGCCAGTTTCATGTCGTTCGGGGTGAAGAGGAGATGGTTTGCTCTCGCCGCCGCAATCCAGTTGGCTTTCAGCACGTACGCGTCCTACATCGGTGGACATGTCCATTATGGAGACTGGTTAAAGGTGAGGATGTACTCGAGGGCCATGGCTGTTATCGGAGGTTTCCTAGTGCTGGCCAGTGGAGCAGGAGAAGTGTACAGGCAGAAACCACGTACACGCTCACTACAATCCACTGGCCAAGTCTTCTTAGGAATCTACTTAATCTGTGTGGTTTACTCCCTCCAGCACAGTCAGGAGGACAGATCAGCGTACTTGGACCACATCCCCGGTGGTGAGATCACCATTCAGCTCCTGGTTATTCTCTTTGGcttgctcgctctctctttcctctcggGGTACTACGTGCGTTTAGCCGCACAGATTTTAGCCGTGCTCCTCCCACTCATCATTCTGTTCATCGATGGAAATATTGGCTACTGGCACCACACGCGCCGCGTCGAGTTCTGGAACCAGATGAAGCTGATCGGACACAATGTGGCCATCTTCGGAGCTGTGCTTATCCTCGGTACAGATGGCtaaacacacaggaagtgaatgTCAGCTTAGCACAAATAGTGAACAGTAGCTGCAGTGGTGCTTAAAAGTTTGTTAAACctttagaattttctatatttctgcaaaAATGTGACCTAAAAcatcatcattttcacacaAGTCCTAAATGTAGACAAAGAGAACCCAGTTAATCAAATGagataaaaatattatacttggtCATTTGTTTATTGAGGAAAACGATCCAATATTACATTTCTGTgagtggcaaaagtatgtgaacctctaGGGTTAGCAGTTAATTTGAAGGTGAAATTAGAGTCAGGTGTTTTCAATCAATGGGATGACAATCAGGTGTGAGTGAGCGctctgttttattaaaagtgcaGAGATCTATCAAAGGCTGATCTTCACAACACGTTTGCGTAAATGTATCACGGCGCAAACAAAGGAGATTTCTGAGGACCTCAGAAAAAGAGAGTTGTTGATGCTCATCAGGCTGGAAACGGTTACAAAACCATCTCTAACGAGTTTATACTCCACCAATCCAGTCAGACAGATTGTGTACAAATGGAGGCCACTGGATTTccctcaataaataaatgaccaagaataatattttttgtctcatttgtttaattgggtgCTTTTTGTCTACTTTTCGGACTGGTGTGAAAATTTGATTAGGTTTTAGAtcatatttatgcagatatATAGAAAATTgataaagggttcacaaactttcaagcaccacTGTACATTCAAACCGCACTGAACGGTTGCTCCAAATTATGTGTTAAATGTCAGAGTAGAGTGGCAACTCTTGAGTTCAATATTGGCTATGTCCAAACCTAgagaagaaaacatttcagatgtTAAACTGCAGAGCTGGCTTTGTATCTGACATTATTCAGTACGCTAATGCGCGGCTTTGTACTTGGAGGCGGAATACTCCTCTGGCATACTGTACCGGAGAGATGGCacaatattattacacactgtTTTCAGATTATGTTCTGATTATGTTGCCTGTTTCTCAGGGTTGAATTGGAATTCTTCAGTCATCATTCTAGATACTGACAGGCAAATTATTTATGAATCCAGTTTAAGAATAGAGATATCACCTTGCTACATTTTTGCCTGTGGTcgtcattttaaagaaaaggcCAGTTTGAAAAAGGTGTTTGAATCTTAAGTGActgtttacatttcatttcagcttttttttttacttaatgtaAGATTTGCTACAGGTCTTAAAAATGTTGGATTGTTAATTAGAGCCTGTTTAAAAGGCTGTTTTGAATGCTGTATACTATGTTAAAAAAGGGGGAATATTTTTTGTCAGCTGTCATAAGCAATTCCAAGACTGCTCCATTACTGGCAGCTCATAGCACTACATTCTTTCTTAATGAAATATCATTGCATCATTGTTTATTAAACAGTGAAAGTTTTCTATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226166 lncRNA downstream 370735 4911734 ~ 4918977 (-) True trnap-cgg_3
TU225963 lncRNA downstream 538835 4701104 ~ 4750877 (-) True G190885
TU225914 lncRNA downstream 623141 4666312 ~ 4666571 (-) True G190849
TU225890 lncRNA downstream 692889 4596539 ~ 4596823 (-) True G190829
TU225878 lncRNA downstream 714182 4573682 ~ 4575530 (-) True G190821
TU226433 lncRNA upstream 88597 5382995 ~ 5387137 (-) True G191279
TU226592 lncRNA upstream 148564 5442962 ~ 5445167 (-) True G191413
TU226604 lncRNA upstream 188222 5482620 ~ 5484667 (-) True G191424
TU226605 lncRNA upstream 194419 5488817 ~ 5489111 (-) False gdpd3b
TU226650 lncRNA upstream 371775 5666173 ~ 5667846 (-) True G191463
XM_026914728.2 mRNA downstream 24355 5256264 ~ 5265357 (-) True g6pc3
XM_026914518.2 mRNA downstream 226294 5059498 ~ 5063418 (-) True LOC113527048
XM_034309046.1 mRNA downstream 291380 4991942 ~ 4998332 (-) True pagr1
XM_026915586.2 mRNA downstream 440034 4837911 ~ 4849678 (-) True fam20a
XM_026915838.2 mRNA downstream 469127 4810652 ~ 4820585 (-) False zdhhc16b
XM_034309110.1 mRNA upstream 17846 5312244 ~ 5322475 (-) True LOC113527073
XM_026915784.2 mRNA upstream 110784 5405182 ~ 5416607 (-) True sgca
XM_034309354.1 mRNA upstream 152074 5446472 ~ 5456359 (-) True lrrc45
XM_026915826.2 mRNA upstream 190293 5484691 ~ 5490925 (-) True gdpd3b
XM_026914514.2 mRNA upstream 208025 5502423 ~ 5509397 (-) True prodh2
TU226226 other downstream 226317 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 336853 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 370740 4918901 ~ 4918972 (-) False trnap-cgg_3
trnap-agg_4 other downstream 371825 4917816 ~ 4917887 (-) True trnap-agg_4
trnap-ugg_13 other downstream 374136 4915505 ~ 4915576 (-) True trnap-ugg_13
trnai-uau_5 other upstream 7715 5302113 ~ 5302205 (-) True trnai-uau_5
trnav-uac_7 other upstream 179000 5473398 ~ 5473470 (-) True trnav-uac_7
TU226617 other upstream 316722 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 474130 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 1253673 6548071 ~ 6594390 (-) False itga3b

Expression Profile