RNA id: XM_026914694.2


Basic Information

Item Value
RNA id XM_026914694.2
length 2745
RNA type mRNA
GC content 0.43
exon number 11
gene id gabrz
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12522935 ~ 12544716 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGAGCGCGAGCGCATCTGACGCGGGTTTCAACGCAAACAAAACGCAAGctgACAGAAGCATCTGACGCACTGAGGCTGTGCAGATGAGCGCTCAGTTATTCGCCGCTGCTCCTGTTCAGTTTGGACATGCACACGCGTGAACGACTTTAAATACATACGCTTGAAACTCCAGCAGCCATGTGTTCATGCAGCCCCCTGGGCTCTGTAGTCTTCCTTCTTATTATTAGCAGGATCATACAGGTTTCAAACTCCAGTGCTGAGGAGGTCCTACCACCTACCATTCAGAAACTGATGAAGGGCTACAACAAGTACCTGAGGCCTTTCTTCGGGAATGGTCCTGTTACTGTTGGCATGAGTTTGGACATCGCCAGCATAGATACTATATCAGAGATCAACATGGACTACACAGCAACTATCTTCTTGCGGCAGCGCTGGACAGATGAGCGTCTGTGCTTTGATGGCAATAAGAGCCTGAGTTTGGACGGCAGGCTGGTGGAGCTTCTCTGGGTTCCTGACACGTTCATTGTGGACTCCAAAAAATCCTTTCTGCATGACATCACTGTGGAGAACAGACTGATCAGGATATTCCCAAACGGCACCGTGCTTTATGCTCTGAGAATCACCACCACAGTGGCCTGCAGTATGGACCTGACCAAGTATCCCATGGACAAACAAACTTGCACACTTCAGCTAGAAAGCTGGGGTTATAATGTGAAAGATGTGGTGTTTCATTGGACACGTGGGAACCAGTCAGTTAGTGGACTTGATACTCTGCAGCTGGCCCAGTACACACTGGAGGACTACTATACCTCAGAGTCTGAAGCTGTGTATGAGACAGGCAGGTACCCAAAGCTGATTTTCCACTTCCAGCTGAGGCGAAGCATCCTATACTTCATTCTGGAGACTTATGTGCCATCTAGTGCCCTGGTGGTTTTGTCCTGGGTCTCCTTCTGGATCAGCCAGTCCTCTGTCCCTGCTCGCATTTGCATAGGGGTGACCACAGTCCTGACAATGACCACTCTGATGATGGGCGCACGCACTTCTCTGCCCAATGCTAACTGCTTCATTAAAGCCATTGATGTGTACCTGGGTATCTGCTTCAGCTTCATCTTTGGTGCCCTCATAGAGTATGCTGTGGCCCATTTCTGTACTTTACACCAACCAAATGCTGCCAATGCATATATGTATGGACAGGAGATGCAGGAACGTGAGGATGAGATGAATGGGATCGTCGCATCCATTGGCAGCCAGGCTCTGCGGGTACGCAGAAGGGAGGAGATGCTGTCCCGTGCTGGCAGCACTAGCAGTCCCACTCCCAGTGACACTAAAGAGGACAAGTCGTCCTCCCAGACCAAGAGTGGCTGCACCAAGTCCCTGTCACTGCTGCGCCGCATTGTGTGCTTCCTGAACTGTTGCCATGTGGAAAACCCACACTACATTGACAACTACTCACGTCTGACCTTCCCtctttccttcatcttcattaaTCTGCTCTACTGGACCTACTACCTGtacttttagtgtgtgtgtttttatgagtGTGAGGGTTTCATATCTCTGCAATATGTTACAGCAATTTGGGGATTTAATGCACTTTTCTCTTAGCATGTTTTTTGCAGATACTACATGTGACTCATGCATATAGTATGTAACTTTTACTCGTTTTGTCCTACAggatgtgtgtttatttggacTGGTCAAGGTTGTAACAGTGGATGAGTTTGGATGAGTGTTGATTCCCAAAGGTATGTTTATGTGAGAAATATGTGCCCTTTGTTTTCAGTAGAGCTTCACAAGACTACACAAGACTATCCAATGCAACTAAAAGAACGAAAGTGTGAAACAAACGTGACTATTTTAAATTCTACATATTTTAAAGCAGGatcaataatgtaataatgaataGCAAGACCAaagatttaattcatttttagtaTCTATGAATTCAAATATTTCAGTGCATGTTATTAGATGTTAGGCAGGTAGCattatatgaattatttcaGTTATTGTTATTTGAACAGTCAGTGTCATTGAGCTTTGTGATTATAAATTGCTgccttcaagaaaaaaaaatcaccaaatgatttttttcaccaAGCATGACAGTGAATCGATAACATCACTGCagtgttgtttttctgtgtcAATGACATGaccatttaacattattttcttCATCCAAAAATACCAACATAATCAGGCGAATTTCAAAAGTGAAATGAAACTTGAAACAGTTGaaagttgttattattaatattagtataaTATTTTACGCACGTATTGGTCAGCAGAAATAGGAGCtgggttttattttgtgtacatACTGAACTATATTTATTCAAAGCATCCCTCCAACTTGGTGTATGTTCTGTAGAGAGTTGCAGGCTTATGTTAGTTTTATCACTATCTTTTCTTACATTGTCCTTTGCCCTTTTTTATTAACTGCACAGAATATTCACTTGTTTTACAGATATAATGTCTTCCTACTGTACTGAATTTTGAACCACAAAGGCATTATTTATTAGCAAGAGTTTCTTATTACTATAAAGGTCTTTACAGATGTTTTGCAAGTTATATATTTCCAGTCATGCATGAGTCTTGTGCAGTGGAAATAAGCCATGTGGCTCCAGTATGTTTTTCATGCATGGGAGATTATGATGCATCAATTCCCACAGCTTGTGAGGAAGGGTGCATGGTTTTGGCTGTGGGAAGTTTTACAATAAACTAGATCATAATTGT

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05189 GABRP; gamma-aminobutyric acid receptor subunit pi

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579205.1 lncRNA upstream 69257 12451893 ~ 12453678 (+) True LOC117598562
TU231049 lncRNA upstream 148655 12374010 ~ 12374280 (+) True G195084
TU231048 lncRNA upstream 151650 12371056 ~ 12371285 (+) True G195083
TU231012 lncRNA upstream 273180 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 346816 12174394 ~ 12176119 (+) True G195016
TU231214 lncRNA downstream 5418 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 98552 12643268 ~ 12643526 (+) True G195287
TU231306 lncRNA downstream 113389 12658105 ~ 12658323 (+) True G195301
TU231526 lncRNA downstream 299609 12844325 ~ 12844561 (+) True G195512
TU231613 lncRNA downstream 414224 12958940 ~ 12963243 (+) False ablim1b
XM_034309464.1 mRNA upstream 20066 12495668 ~ 12502869 (+) True valopb
XM_034309533.1 mRNA upstream 35382 12484134 ~ 12487553 (+) True si:rp71-1c10.8
XM_026914610.2 mRNA upstream 35382 12484134 ~ 12487553 (+) False si:rp71-1c10.8
XM_026915699.2 mRNA upstream 48952 12472679 ~ 12473983 (+) True LOC113527673
XM_034309496.1 mRNA upstream 48952 12472691 ~ 12473983 (+) False LOC113527673
XM_026914691.2 mRNA downstream 18781 12563497 ~ 12575544 (+) True adgra1a
XM_026914693.2 mRNA downstream 26562 12571278 ~ 12575544 (+) False adgra1a
XM_026914692.2 mRNA downstream 26689 12571405 ~ 12575544 (+) False adgra1a
XM_026915779.2 mRNA downstream 49779 12594495 ~ 12596222 (+) True mxtx2
XM_026915462.2 mRNA downstream 51657 12596373 ~ 12615218 (+) True bms1
TU231182 other upstream 49196 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 1236667 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2458309 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2887868 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 3009100 9513764 ~ 9513835 (+) True trnaq-cug_15
XR_004579176.1 other downstream 938585 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 938585 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4311054 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5032567 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 5610435 18155151 ~ 18158629 (+) False pde6gb

Expression Profile