RNA id: XM_026914728.2


Basic Information

Item Value
RNA id XM_026914728.2
length 3085
RNA type mRNA
GC content 0.43
exon number 6
gene id g6pc3
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5256264 ~ 5265357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagtgttaaaataaaacgaTACTTCTACTCAAAACATCACTCATAAAGACAGGTTTGGGCTCATtttcttgaagggtgccaataattctggagctgacagTTTCTGTGGTCTTACAATCAGCACTAGCTATATTTCAGCATTTCGCGTTTTCGTTTTTGTAAGTCCCTTGCCGGCATCCGTAACGAAAAAGTAAACAGATGCTGACTGTAACTTTTCTACCGGCGGATTCGTTAGCAGTAGCATTAGCATGAGCATTAGCATGAGCATTGTTGTCAAGATGTGTGTGAGGAACCCGAGTGTTAAATATTCGCCCtagttgttttcttttgaaCCTGAGCATCATATCTGTCCTACAGTGTTCCTGCTGCTCGTTAGCCCCGGCTACATCACTTAGCAAGCTAGCTCTCTTGTGCTCTGATGCTAATCAGTAGGATTCAGTGAAATGGAGATAGTCTACACTCAAGGCATTTGGATGGCTGAGCTTCTTCAGTCAAACACCAGAAAGTATGAATCTTTCTGGCTGCTCGTTACTCATATGGGAGACCCAAAAGCGGCGTTCCTGCTCGTTTTCCCACCCGTTTTCTACCTGCACAGACGAACAGGCATCGCCATCCTCTGGGTGGCTGCTGTATCAGAGTGGCTTAATCTTCTCTTTAAATGGGTCCTGTTTGGGGAAAGGCCTTACTGGTGGATAGGTCAGTCGGGTTTATTTGTGAAAAACAGCCCTTCGGTCCAGCAGTTCCAGTCCACCTGTGAGACAGGACCAGGCAGTCCCTCAGGCCATGCCATGGTCACCGCTGCAGTCTGGTGGGTGGCGGTGTCCGCCCTGGCCTCCTTTCTTCACGCTCGCTCTGGCAGTAAGATACTGGCTGCGGTACCGTACGTCTTCTACACGCTGCTGCTGGGAGCAGTTGGTCTGTCTCGGGTCTTCATTTTGGCTCATTTTCCGCACCAGGTCATCGCTGGCGTTCTGACAGGCATGATGCTGGGAGTGTTTTTAAACCGCACAGTGCCAGATTGTCGCCCCCTGCTGTTCTTCCTGTGCTCCAGCATGGCTCTGCTGTTCGGAGCACTGCTCATGCATGCTGTGCTGAAGAAGGTTGGCATCGACCTCGCCTGGTCTATTGCGTTGGCCAAGAGATGGTGCTCTAAGTCTGAGTGGGTTCGCATGGACACAAATCCTTTCTCCTCTCTGAGCCGTGATGCTGGCGCGCTGCTCGGGCTGGGGCTTGCCCAGTTCTGGAAGCCGGGAGGATGGGTACTTCCCTGGGTGCCAAAGACCCTCTGCATGGCGCTGTCCTCCATGGCCCTGTACCACGTGAGCCGGTTCCCTCTGCCTACAGCTCCAGCCCTCCTCTTTTACTCACTCTTTTTCCTCAAATATGTCATAGTGCCCCAGGTAGTGATGGTGCTAGTACCTGGCCTGGTGCATCTCCTCACAGCCAAACCCAAGAGGGACTGAgaagaatgaacagaatgacTTTTAACCTCTGTATGGAGTCAAAAATTGCCACCGAAGGTAGTGTATTGACAAATGGCTGTTCCAGGACCATCACATTAGTTGTCACAAGGCTAGCTGTTTATTCTACAGGTATCATTCCATATTGAGAAGAATGACAATTTTCATATTGTCCACtaaatttgttttgttctgtcaAAATGTTCTGTCCAattcaaacactgattttttttcacactgatttttttttttttaataaacggTAGTAATATGTCCCAGACAGAATAATAAAGCAATATTTATAATGAAGACGTTAAATGTATACAGGGAATATGCCCTGAGAAAACATTCCTTCTTGAGTAATCCCAATCGTGAGCAGTCTGCATGTTTGCAGTTCCATTATAAGCAATAATTCTGCTATTGTTTTTGACCTTGTCAGGATTTTCTTAAGTctaaatactgtatgtgcttACATATAAAATGTTTGATCATTCATCTTGATGGGGAAATGCTGGTTAACAGGTTGCTGTTGGTGCAAGGTCACAGAAGTGCACAGTTTAGTTGATTCTTGGCAAATCAACCACTGGATAGCAATTTTGTTGGAATGTCACCTGAAAGAAGCCCTTCCTAAGAACAGCACACAATTTGCAGCTCCTGAACTCCATTGAAAATTGAGTGCTGCAGACCAAAGTCAAACTTTCTGATCATGAGCAACATCAGCATGTATAAGCAAAGGTCCCTAGCCTAAAATGTGGTGGATCATTGGTGCTGTGGGGCTGATTTGTGGCTAGTGATCTAAGGGCCCTTAATGCCATCATTAATTCTGCTGCGTACTGGgacattttaatgcaaaatctgGTTGTCTGGTTGAAGTTATGACTTGAACATTCAACAATTCAACTATTGTGTACAGTATTTCATTATTGCTATTACATACATGTTCTCTCTTCATGTAACAGTGGGACATGCAAACCGACTTGACTGTAAAGGCCTTTTATTCTCCTGTTGTTAAGAGAATGAGACAAAACGTAAACGGTGTTTTGCAGTGGCCGTCTGTTTAGCACCCTTCAACAGAGGTAATACAATGGCAActccattaaaaataatatgtaaCCTTACAGGAAGATGAGTCAGTCTAAATGCCATATCAAGCAGAATTGCAGACATTGAGGCCTTTTTGTGTGTTCATAAcacaaaggaaaaataaagtcaTAGCATTGGCCCGAtatattattggcatttttGTGGCAGTAATAGGGAGAATAAAGGTATTATTGTAAAAAGGGCCTCCAGGCTGGACCCAATTGAATACCAGTGATGTGAATTGATGGTGTCCATATGCACAAGCCTAAGAATACAAAGGAGTTTAAAAAGGTGCATCACGGAGGATTCAAGATTCTCTACATGTGTCTCAAACTTTGTAGAAATTGTACTGCTTTAAAAGGTTATGCTTGAAAAAAgaattgtattaaaataatactaCACAGTATCAAATGTATGACTTAAAACACCATTAACTGTATGTGTTACTCATTTCATATAAtaatttctgctcattttcaGAATAATTTTGAAGTTGACTGTATCACAGTTATTTGCAGTATGATTAAACACATAGTCACAGA

Function

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004346 glucose-6-phosphatase activity molecular_function

KEGG:

id description
K01084 G6PC; glucose-6-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226166 lncRNA downstream 337287 4911734 ~ 4918977 (-) True trnap-cgg_3
TU225963 lncRNA downstream 505387 4701104 ~ 4750877 (-) True G190885
TU225914 lncRNA downstream 589693 4666312 ~ 4666571 (-) True G190849
TU225890 lncRNA downstream 659441 4596539 ~ 4596823 (-) True G190829
TU225878 lncRNA downstream 680734 4573682 ~ 4575530 (-) True G190821
TU226433 lncRNA upstream 117638 5382995 ~ 5387137 (-) True G191279
TU226592 lncRNA upstream 177605 5442962 ~ 5445167 (-) True G191413
TU226604 lncRNA upstream 217263 5482620 ~ 5484667 (-) True G191424
TU226605 lncRNA upstream 223460 5488817 ~ 5489111 (-) False gdpd3b
TU226650 lncRNA upstream 400816 5666173 ~ 5667846 (-) True G191463
XM_026914518.2 mRNA downstream 192846 5059498 ~ 5063418 (-) True LOC113527048
XM_034309046.1 mRNA downstream 257932 4991942 ~ 4998332 (-) True pagr1
XM_026915586.2 mRNA downstream 406586 4837911 ~ 4849678 (-) True fam20a
XM_034309628.1 mRNA downstream 428912 4810652 ~ 4827352 (-) False zdhhc16b
XM_026914669.2 mRNA upstream 24355 5289712 ~ 5294398 (-) True tmem101
XM_034309110.1 mRNA upstream 46887 5312244 ~ 5322475 (-) True LOC113527073
XM_026915784.2 mRNA upstream 139825 5405182 ~ 5416607 (-) True sgca
XM_034309354.1 mRNA upstream 181115 5446472 ~ 5456359 (-) True lrrc45
XM_026915826.2 mRNA upstream 219334 5484691 ~ 5490925 (-) True gdpd3b
TU226226 other downstream 192869 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 303405 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 337292 4918901 ~ 4918972 (-) False trnap-cgg_3
trnap-agg_4 other downstream 338377 4917816 ~ 4917887 (-) True trnap-agg_4
trnap-ugg_13 other downstream 340688 4915505 ~ 4915576 (-) True trnap-ugg_13
trnai-uau_5 other upstream 36756 5302113 ~ 5302205 (-) True trnai-uau_5
trnav-uac_7 other upstream 208041 5473398 ~ 5473470 (-) True trnav-uac_7
TU226617 other upstream 345763 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 503171 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 1282714 6548071 ~ 6594390 (-) False itga3b

Expression Profile