RNA id: XM_026914735.2


Basic Information

Item Value
RNA id XM_026914735.2
length 2338
RNA type mRNA
GC content 0.46
exon number 9
gene id ca10a
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22508418 ~ 22701836 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacgctCCTTCAGTCTCTCCCacccctctctcactctctgactctctctgcaGGATCGGGACGGCTCCATCATGTCCGCGGCGCGTCTCAGAGCCTCTCCGGGAAACTAAAGCGCGCACCCTTTTAAAGTgcgggtgttttttttgttgttgttgttgttgttgttgtctggAGCTCGGCGAGGACGCGGAGAAACGCCAAGTGAAGCACATGCGTGGAGGATTTTAGTGGATTTTTGAGTGCGTTTCTGAAGCGCGGCGTCATGTCTCCGAGATAAACGCgcctctctctcagtgtgtgtgagtgtgagtgtgtgtgtgcgtgtgtgtgtgtgcgcgcgcgctcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgatgttaccTTGTGGAAGGTGTGCAACGGGAAAGACGCTGGCTGGACTCGACATCTGCAACTGATCTGCCGTGTTTCTGGAGCACCATGTCCCTGGAATGAAGGAAGAAAATCAAACATGGATATAATCTGGGAAATACTGATTATTCTTCAAGCCAATTTCATCGTTTGTACAACAGCTCAGCCAGGTCCCCCCAAAATTCATGAGGGATGGTGGGCGTACAAAGAGGTCGTACAAGGGAGCTTTGTTCCAGTTCCATCCTTCTGGGGTCTTGTGAATTCAGCATGGAACCTGTGTTCGGTGGGAAAGAGACAGTCTCCAGTCAACATTGAGACCAGCCATAtgatatttgacccctttctgACACCACTGAGACTGAACACTGGGGGCAGGAAGGTGGGAGGGACCATGTACAACACCGGCCGCCACGTCTCGCTACGTCTGGACAAGGAGCACTTGGTGAACATCTCGGGCGGACCGATGACTTACAGCCACCGACTGGAGGAAATCAGGTTACACTTTGGCAGCGAAGACGGACAGGGCTCGGAGCATCTCCTCAACGGCCAGGCCTTCTCCGGGGAGGTACAACTGATCCACTACAACCACGAGCTCTACACTAATTATACAGAAGCTGCAAAGAGTCCAAACGGCTTGGTGATAGTGTCTATATTCATGAAGATATCCGAGACTTCAAATTCCTTTCTGAATCGGATGTTGAACAGAGATACCATCACTAGAATAACATATAAGAatGATGCTTATTTACTATCTGGGCTAAATATCGAGGAGGTGTATCCCGAGACATCGAGTTTCATCACCTACGAAGGATCGATGACTATCCCTCCATGTTTTGAGACTGCGACATGGATTCTCATGAACAAGCCAATATATGTCACAAAAATGCAGATGCACTCCATGCGGCTGCTCAGCCAGAACCAGCCTTCGCAGATCTTCCTCAGCATGAGTGATAACGTGCGTCCGGTCCAGCCTCTGAACAACCGCTGCATCCGCACCAACATCAACTTCAGCATGCAGGGCAAGGACTGTCCCAACAACAGGGCCCAGAAGCTGCAGTACCGAGTGAATGAATGGCTGCTGAAATAGACCCCTTTCATGGATGAGCCCAAATATAAAACAAGACAccgagaggggggaaaaaaggatgaaaGACGGCGGAGGAGCAGAACGGACTCTAGACTGCATCACATTTGTCCTGCCAGATAGTCATGACAttgtaaagggaaaaaaaagagaaaaaaaataataaataataacttcaATAAGAAGAGACTTTGGCAAAAAAGACTCTGTTTCATACATCAGCTCAAAACCAGTGAAGTACAAATAGGTTTTGATactttttttggtgaaaaaaaaagaaaaaaagcgaAACCATAcaaaaattgaaatatttatttcatattcacTTCACAAAATGGAACTCAAGATGTCTTTTTAACCTTTGTACATATGGATCCCTTACTGCAAAGCGTTCAAACCTTCAACAACAGGATGGACATTAAGCTGGAGACTGAAAGTGGGAGCATCCTCATAACTGCATTGTCTTAATCATAACTCCGGGACACAGCGGAGAGGACGAGAGAACGAGAGAACGAAAGGATGAGAGGATGACAGGACGACAGGATGACAGGATGACGGCTGCCGCGCTAATGACACTACAGAGGAATGTAcatgaaagctgtttttgaggCACAATGAGGGTTCTGGCCTTGTAAATAGAATTATTCATGCTGAAAATTAACATGTAAAGatacaaataaacattaaaaaagaatatatcAGAGggaaaaataactgaaaaaaaagcgTTGAATATTTTATGCTTGGCACACTGAATTTCTGGAGGAGAGCTGatgcctttttttctgttttattgtttacaatGGTCCTacactgtgtttgtttaatgttatcGGCCCAATAAATGTGTTTGGAACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237612 lncRNA upstream 160300 22347890 ~ 22348118 (+) True G200807
TU237582 lncRNA upstream 266106 22124233 ~ 22242312 (+) True G200784
TU237575 lncRNA upstream 393596 22114406 ~ 22114822 (+) True G200779
TU237327 lncRNA upstream 481937 22013806 ~ 22026481 (+) True LOC113527202
TU237320 lncRNA upstream 508526 21999686 ~ 21999892 (+) True G200569
TU237831 lncRNA downstream 165072 22866908 ~ 22868838 (+) True G201019
TU237911 lncRNA downstream 401448 23103284 ~ 23103499 (+) True G201093
TU237895 lncRNA downstream 402840 23104676 ~ 23105908 (+) True G201077
TU238015 lncRNA downstream 566791 23268627 ~ 23269419 (+) True G201186
TU238014 lncRNA downstream 566956 23268792 ~ 23269419 (+) False G201186
XM_034309600.1 mRNA upstream 265643 22240505 ~ 22242775 (+) True LOC117598678
XM_026915642.2 mRNA upstream 304389 22201501 ~ 22204029 (+) True LOC113527641
XM_026915616.2 mRNA upstream 381772 22124336 ~ 22126646 (+) True LOC113527624
XM_026914930.2 mRNA upstream 419148 22038134 ~ 22089270 (+) False si:ch211-119c20.2
XM_026915534.2 mRNA downstream 96306 22798142 ~ 22802638 (+) False mrpl27
XM_034309559.1 mRNA downstream 105343 22807179 ~ 22847566 (+) True pkd1b
XM_034309560.1 mRNA downstream 105343 22807179 ~ 22847566 (+) False pkd1b
XM_034309561.1 mRNA downstream 105343 22807179 ~ 22847566 (+) False pkd1b
XM_026915333.2 mRNA downstream 105343 22807179 ~ 22847565 (+) False pkd1b
XR_003402874.2 other upstream 496114 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 505144 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 2941734 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 3696156 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU237829 other downstream 96345 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 503830 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 622237 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 655675 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 1679951 24381787 ~ 24382287 (+) True G201962

Expression Profile