RNA id: XM_034309083.1


Basic Information

Item Value
RNA id XM_034309083.1
length 2189
RNA type mRNA
GC content 0.38
exon number 4
gene id csdc2a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11227745 ~ 11231747 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTTAATACccactgtttgactttatagtatacaaaTATGGAAGAGGAATGATTTATGATCCCACTACCCAGTGTTCcctagaagaggatgggttttcAGTCTGcactcaaggtttcttcctcttgtcgtctcagggagtttttcctacCCTTTGTCGcatctggcttgcttattagggatgtAAATAGGCTAAATCTACAACCAGGcgtctgtgaagctgctttgtgacaatgtctattatcaaaagcgctatacaaatcaAACTTAAGTGAATAGTCGATGGGTCATATCTAACCCCCCTATGAGGGAATGAGTGtacgttttatttattatttttttcctagaaAAGGCACATCCagacctcctcctcctccatcagcaCATCATTCGTCTCCAGCCAGTGAAGCCTGCAGGTTCAGAGGGTTCAGACTCCTCTGAACGATGACTGATTCAgacacttcatcatcatctgatCCCCTGCTGCACAAACCCCACGCTCCCCTCCCactctctttcccttttctgAGAGGGGGCAGTCATGTCTGGGAGAGGAAACCGCCACAAGCTGGGGAGCCACATAGTCCACTTCCCACAAAGCGCAATCGCTCCTACTCAGCTACTGTGAGGTCCAGGTCTGGACCAGTTTTCAAGGGAGTCTGCAAGAACTTCTCTAGATCCCAAGGACATGGTTTCATCCGACCTACTCATGGAGGAGAGGACATATTTGTTCACATATCAGACATTGAGGGTGAATATGTACCAGTGGAGGGGGATGAAGTGACCTACAAAGTGTGCCCTGTTCCACCGAAGAATCTGAAGTTCCAGGCAGTAGAGGTGGTAATCACTAACCTTACACCAGGAACAAAGCATGAGACATGGTCTGGACAAGTTATCAGCTCATAGCTCTGACATTTACACTTGCTAGAATGAAGAACAGACGTTTGGGCAGGACAAATTCTGACATTGAGAAGGAAAATTCAATGTTACAAAATAGTtgaagactttaaaaaaatatatttactaacATAAGCTTGAAATGGTATTATGTGTAAGTAGGTTATGGGTGGATTTGGGGTTGTGTAACTTCCAGGTCTTTAGCTTGGCAAATATGTGCTATAAACTAGTATTGGAAGGTGGTCTAACTAAATGGAGTTAGAAGTTAGTTTGGCAGGTCTGACTGAGCTTTTAAAATGGCAGTAGAagtaacataaaaacataaacccTCCATCTGGTTAGCATTgacttttctgtctgtctgtctgtctgtctgtctgtatttatttatttatttatttatttatttatttattagggcGTAgttgatttcattattttggtGCATTGTAATTACATACTACCAACAACTAATGTTAGTGTCTTTTGAATGATAAGTGATAATTATACTCTTAATAATTATAGAACAAATGTCAAATTTCTGTAAGTGAAAAATTTAATTACCTTACCTCACAGGAGTGgacaaagtactgagaaattatacttaagtgaaaatatagataatgtgtcacaatcttactcaattaaaagtggaagtatcctGCCAAAAAATGTAATCAAGTGAAAGTTAAGTAGTTCCTACTACTAGAGCCAGCGTGCACATCCTCAAGTTCCTCAGTGCAATGGATTATCCATATTCAGACGCACGTGGTTAGCTATACCtctaactacattgtgtaacATGAGAAGGACGAGGTTTATAATAggtactttgaaggtctaactaaaaatgtaaggagtaaaaaataAGTCTTTGTCTTGAAAATGTAATGAGGTAAGGGTAGAAATACTCAGTTTCAACAACAATCAAGTATAAATGCatcaaaataatacttaagtatagtaatgaaGTACAACTACTCAAATATTGTCCACCCCTGCTCAAAATAGAGAATTGTTTTTTGTTAAGAACATTGGAAATACTCACAAACCTCATCCATCTGATAATGGGCTGTTCATTAGTGAAAAGCAGTTTATTGGCATTGCATTGTCAGTGTCTTCATCTGTAACAAACTGTGTGCAGTTTaagaacattaaataaacaacgGGTATTTGACTGAATACCCCACTCAAATTCACTTCTTTCCCACCTTCAGCGTAACTGTAATTTTACTGTCtacaatgtaataaaaatggttgtttgaatgtaataaaaatggttGTTTGAATTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230183 lncRNA upstream 20769 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 107195 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 131567 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 164063 11062164 ~ 11063682 (+) True G194365
TU230097 lncRNA upstream 259712 10965638 ~ 10968033 (+) True G194278
TU230242 lncRNA downstream 16016 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230438 lncRNA downstream 146714 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 361145 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 365783 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 382642 11614389 ~ 11621269 (+) True tmem106a
XM_026915270.2 mRNA upstream 1847 11216242 ~ 11225898 (+) True aco2
XM_026915343.2 mRNA upstream 18028 11202556 ~ 11209717 (+) False tefa
XM_026915342.2 mRNA upstream 18028 11204682 ~ 11209717 (+) True tefa
XM_026914997.2 mRNA upstream 27696 11186325 ~ 11200049 (+) False zc3h7bb
XM_034309323.1 mRNA upstream 27696 11186737 ~ 11200049 (+) True zc3h7bb
XM_034309360.1 mRNA downstream 1843 11233590 ~ 11248213 (+) True si:ch73-139e5.4
XM_026914613.2 mRNA downstream 33664 11265411 ~ 11272446 (+) True rangap1b
XM_026915923.2 mRNA downstream 41382 11273129 ~ 11278655 (+) True chadlb
XM_026914597.2 mRNA downstream 59306 11291053 ~ 11314637 (+) True ep300a
XM_026914603.2 mRNA downstream 59306 11291053 ~ 11314637 (+) False ep300a
trnal-aag_8 other upstream 1163119 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1592678 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1713910 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1715114 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1715505 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 54450 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1240936 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2251554 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2251554 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5624023 16855770 ~ 16863495 (+) False anapc16

Expression Profile