RNA id: XM_026914750.2


Basic Information

Item Value
RNA id XM_026914750.2
length 2642
RNA type mRNA
GC content 0.37
exon number 5
gene id prrt2
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6253948 ~ 6259961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCTGGGATGGATGCTGGCTTTGTGCATCTCTCAGTTTCAGatctaataataaatttttttttaaaatatgcttgTCGGAGAAATACGACAacgtgggattttttttttctaatgcaaATTTAGGGAATAACAATTAGAGACAAGAACAATTACAACATGAAATCTGCCAGTGGCTTTAATTGGAGAATGTGAATGAGGTGGATATCTTATCCCTGTTCAAAGCATCATCAATTTGGACATTCTGACCTCTTTCTCCATAAAAATGGACAACCACCAGACACTGACAGACTCATTGCTTGGACCCCAGGATAGAGCGCCATCAGGCAGCCAGACTCCAGGCCCTGTTACAATTCAGCCAACTGAGACAGCCTTCTCTGCACACAAATCTGACTCATTCCCCTGCCTGCAACCTCTCTCTTTGCACCAGCAAGCCCAGGGAGAGGTACATGAGTCTGGAGAGGTCGTAGTAGTCGTCAAACAGAAGACTGCAAATGGTCATGGAGTCTACTCCTCTCCTTCAGAAGCGAAAACATCAGTTCCCAGACTCTCCTCTCCACCTCGGCGTCATCATTCCATGCCCCATGCACACCCCCCTCACTTTGGACGCACGCGAAAGGGTAGCAGATCCAGCTCCATTGCTTACACAGCATTCTCCCCACGGCCTTCAATCTCCCGCCACTCCAGCTTGGCAACCAACCCACCGCTGGATCGCTCCAAACCCAAAGATTACCTCATCCTGGCTATTATTGCCTGCTTCTGCCCCGTTTGGCCAATTAACATTGTGGGATTTGTCTACTCTGTCATGTCCCGCAACAGCTTGGAACAGGGGAATATTGATGGAGCCATACGGCTGGGCCGGGTAGCTAAGCTACTTTCCATCGTGTCAATTGTGGGTGGGGTTATCATCATAGTGGCATGTGCTGTCAATTTATCAAttaATGTGAAATCCTGAGGTGAGCTTTATCCTCTCAAATTCAGCTTCGCATCAGACTACTGACCAGAAGACCATACCTCTCTCTGGCTATCTATCTGTTCCTGTGATCACAGTTTTAGCTAGGTGGTTAATAAGTAAGCTGACACCTTGTTCCTCTCTAGCACActctaattaataataataataataataataatacgctACACTGAACATGAAACTCCGCCACAAGAAATAGAGGAgaaatgcatgaatgtttgaatcAGTGTTTGCTGCAGACCATTTTAGCCAAAAGCACTTGATGCTCGTGTTGAAAATGATGAAGCCCTAATCCACACACAGTCCACTTTATGAGAATATGGCTTGGTCAGGATGCACGTTTCAGATCAGCTGTGAGAATCGCACTGCGTCATGCAAAATTTTATGAGAAGCTTTTCATGAGAAAAATGCACCGTAAGTCCTGAGACTTTCCCTTGTCAtgtgaagaggaggagaaaacaCATTGCACTTTTAGAGTGTAAAATGATATGGCCACATTGGCAGATACTGAAACCAGAacttaatgttttaatgtgaaaaatgaattgcATTGCTGGAGTAGAAGCAAAAAGATGGCAGCTCCttaattaatacataatttatgtaattgaaaaatgttttttagtttgttttacaCATGTTGAAAaatatatgttgtaatttttttaaacttctttaaattaaagttttgttgttttttttttatttaacatattttaataatgttcacaaatgacattttgttcacAAATTGTAGTAATGACTGAACAACTTGCCTGAATTTACAGTATGTTGCTGTATTTTGTCAGGTTATCTTATATTTtgcttatatttgttttttagctTGATCTGATTATCATAAATTATCATCTTTGTGATCATTTAAAACAATAGTGTCATAAATATGGCccttaaaaaatgcaataatacaGTTACAAAAATTCCACTTTTCTTgatttattacaaaatgaaatatgtagcctgtttgataaaaaaaaaaggatgcaaGTGCTTGAAGAAAATTTGAAATTTGGGATGGTTTCATAGGACACAATGTCTCCTACAGGTGAAGCACTCATTGTTGTATATTGACTTTAtatgctgtgattttttttgtactaaaaGGTATTGTAGGATTTACATATAAGCACTGTGTAACCTTTAAATTCAAACTTTCATCACTCGTGGACTAACAATGAAACCTCGTGTTTCGTATTATGTATTGCATTAGCTAGTAATTATTATCCCTTTCCATACCTGCAGTGGGAATGTTGGATTCCTGATGCAGATATATTAGTGATttggattttcttttaaatatatattgtgctatttttaattataatgttGTAAGTAGTTgtcattttatgattttataataACAGTATGATATGAATAGTCACAAAGTTGATGAATAGGCTGATTTCCACAGCTTCATTTGTTTAACTTACAGTAATTGTCTGCCCATGTGGTAgaatctttatttcattttattttattttattttattttaatttactttattttattttattgatttttgcaTTGTATAAAACAAGCATATTACAAGCATGGCACTTAGATTTGCATGGTGTTTTTTGTAAGTCCTGTAGCCTTCACAGTGTGTATCTAAagggaaaagagaaataaactgtTGTAAATATCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226978 lncRNA upstream 36854 6215273 ~ 6217094 (+) True G191711
TU226826 lncRNA upstream 198743 6001068 ~ 6055205 (+) True G191595
TU226822 lncRNA upstream 305362 5946225 ~ 5948586 (+) True G191591
TU226819 lncRNA upstream 313101 5940621 ~ 5940847 (+) True G191588
TU226794 lncRNA upstream 345772 5906464 ~ 5908176 (+) True G191568
TU226989 lncRNA downstream 8563 6268524 ~ 6270885 (+) True G191719
TU227164 lncRNA downstream 200850 6460811 ~ 6461014 (+) True G191866
TU227167 lncRNA downstream 203428 6463389 ~ 6473466 (+) True G191868
TU227354 lncRNA downstream 436771 6696732 ~ 6696970 (+) True G192029
TU227359 lncRNA downstream 466024 6725985 ~ 6728391 (+) True LOC113527389
XM_026914642.2 mRNA upstream 1949 6241543 ~ 6251999 (+) True kif22
XM_026915507.2 mRNA upstream 39603 6186234 ~ 6214345 (+) True arhgap27
XM_034309480.1 mRNA upstream 39603 6186234 ~ 6214345 (+) False arhgap27
XM_026915508.2 mRNA upstream 39603 6186234 ~ 6214345 (+) False arhgap27
XM_026915341.2 mRNA upstream 69584 6168866 ~ 6184364 (+) True plekhm1
XM_026915428.2 mRNA downstream 1709 6261670 ~ 6268234 (+) True cep55l
XM_026915429.2 mRNA downstream 1714 6261675 ~ 6268234 (+) False cep55l
XM_026915427.2 mRNA downstream 13605 6273566 ~ 6283915 (+) True pde6c
XM_026914566.2 mRNA downstream 42417 6302378 ~ 6310386 (+) True lgi1b
XM_026914638.2 mRNA downstream 50944 6310905 ~ 6320106 (+) True slc35g1
trnas-gcu_4 other upstream 23645 6230222 ~ 6230303 (+) True trnas-gcu_4
trnas-gcu_3 other upstream 28763 6225104 ~ 6225185 (+) True trnas-gcu_3
trnal-aag_3 other upstream 29842 6224025 ~ 6224106 (+) True trnal-aag_3
trnas-gcu_2 other upstream 30331 6223536 ~ 6223617 (+) True trnas-gcu_2
trnal-uag other upstream 31150 6222717 ~ 6222798 (+) True trnal-uag
TU227356 other downstream 465360 6725321 ~ 6728391 (+) False LOC113527389
trnap-cgg_4 other downstream 511346 6771307 ~ 6771378 (+) True trnap-cgg_4
trnap-ugg_14 other downstream 512480 6772441 ~ 6772512 (+) True trnap-ugg_14
trnal-uag_1 other downstream 513642 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_15 other downstream 514795 6774756 ~ 6774827 (+) True trnap-ugg_15

Expression Profile