RNA id: XM_026914756.2


Basic Information

Item Value
RNA id XM_026914756.2
length 1858
RNA type mRNA
GC content 0.49
exon number 3
gene id dlx3b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6618651 ~ 6622647 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGGAGTAGCTGCTTCATCTGAGAAGAGTAGAGCACAGAGGAGCTCCAGAGCTCCAGCCCTTCACGGATTCGCCTTAACGGCGTCCCAcgttctcctcttttttttttttaaattatcctTTAAATCACACACTCGTCGCGGGAGAAGGACGTACCAGTGGACGACTGTATCATTTCTTGCAGTGTTCTTCTCACCCATGATGAGTGGAGCGACGTACGACAGGAAGCTATCCGGCATTTCTGCTGATCTCTCCAGCTCTATGAGCTGCCACCCGGGTTCCAAGGACTCGCCTACTCTGCCCGAGTCCTCGGCCACGGACATGGGCTACTACACAGCACAGCAGGGCCACCATGACTACTACCCGGGTCAGGCGTACGCACAAGGGCCGCACAACGCCTCCTACCACCAGTTTAACGTGTGCGCTATGAGCGGCGCGGCTCCCTACGGCGCCAAGGCCGAGTACCCTTACGGCAACGCGTACCGCCACCAGTACGCCCAGTACAGCAGAGAGGGACACACACCACCCCAAAACGCAGTGAAAGAGGAGCCAGAGACTGAAGTTCGGATGGTGAACGGAAAACCCAAGAAAGTGCGCAAACCGCGTACCATCTACTCCAGCTACCAGCTCGCGGCGCTGCAGCGGCGCTTCCAAAAGGCGCAGTACCTCGCGCTCCCGGAGAGAGCAGAGCTGGCTGCACAGCTCGGCTTAACACAGACACAGGTGAAAATATGGTTCCAGAACCGGAGGTCCAAGTTCAAGAAGCTGTACAAGAACGGCGAGATCCCTCTGGAGCACAGTCCCAACGCCAGCGACTCCATGTCGTGTAACTCGCCGCCCTCGCCCGCGCTCTGGGACACCGGCGCGCACGCGAACCCGGTGGGCCGCGGTCACGTGACGCCGGTCGCGCTCAGCTCGTCGACGCCGCCCTACCCGGAAGACTACAGCAGCGCGTGGTACCAGCAGCACGCCGGCCCCCCGCAAAGCGTCTACTGACCACAGACTTTTCACTCCAagagtttaatataaaaatgaaaaacaaaagggACTGGACTTTATTTTTGTAATCTTTATATACACGAGCGCCTAGGCTGTTCGTATGAAgataagctgaaagagagaaagagagagagagagagaaaaacatcaaaacaaaacaaacaaacaaacaaacaaagcgtGCTGAAAAcacttgattgtttttttttctctgataaaAAAGTGACTGATTAAAAGTTTGATCAGCCtcagaagagaaggagaagaggagaggaggagaagggagagaagaagaaggagaagagaaagagaagagaagagaaggagaaggagaagagaaggagaaggaagagaaggaagagaaggagaaggagaagagaaggagaaggaagagaaggaagagaaggaaCACACATTGTGTTGCAGCAATATTTCACCAGCTCGACTATGCAGATCCTAGGCCTAAAGTTATATGGCGtggttttaaattattttacttactCAATCCCTTATTCATATTGATGTTTACGgataattgtttttgtttacatgaGGAAAGATACAGTAGTCCCCAACATTTGTGCAGTTGCCCGACACACATACCACAATGTCACTCCGCTTCAGAGACTCAGGACATAAGTTATATCAATTTGTACAAAATGTAgttgtgtatatacagtatatatatgtgtgtgtgcgcgcgagcgtgtgtgtatgtgtgtgtgcgtgtgtgagagtgtgtttaaataaaacagaaccaCTAAACAATACTGTTTATAAACCCCCGCGTTTTTATAGAGGATTCTCGTGCTTTTATTGTAATGTTGTTTCAGGatgaataaatgcaaatctGAACTCA

Function

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0051216 cartilage development biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09315 DLX3; homeobox protein DLX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227167 lncRNA upstream 145185 6463389 ~ 6473466 (+) True G191868
TU227164 lncRNA upstream 157637 6460811 ~ 6461014 (+) True G191866
TU226989 lncRNA upstream 347766 6268524 ~ 6270885 (+) True G191719
TU226978 lncRNA upstream 401557 6215273 ~ 6217094 (+) True G191711
TU226826 lncRNA upstream 563446 6001068 ~ 6055205 (+) True G191595
TU227354 lncRNA downstream 74085 6696732 ~ 6696970 (+) True G192029
TU227359 lncRNA downstream 103338 6725985 ~ 6728391 (+) True LOC113527389
TU227373 lncRNA downstream 155517 6778164 ~ 6785596 (+) True G192043
TU227745 lncRNA downstream 776696 7399343 ~ 7399628 (+) True G192394
TU227775 lncRNA downstream 851790 7474437 ~ 7475004 (+) True G192422
XM_026915208.2 mRNA upstream 72398 6526233 ~ 6546253 (+) True ace
XM_034309180.1 mRNA upstream 201842 6330477 ~ 6416809 (+) False plce1
XM_026915161.2 mRNA downstream 102680 6725327 ~ 6728144 (+) False LOC113527389
XM_026915160.2 mRNA downstream 102680 6725327 ~ 6726818 (+) False LOC113527389
XM_026915158.2 mRNA downstream 117106 6739753 ~ 6745801 (+) True ptges3l
XM_026915155.2 mRNA downstream 131546 6754193 ~ 6757138 (+) True g6pca.2
XM_026915438.2 mRNA downstream 173360 6796007 ~ 6815445 (+) True sgms1
trnas-gcu_4 other upstream 388348 6230222 ~ 6230303 (+) True trnas-gcu_4
trnas-gcu_3 other upstream 393466 6225104 ~ 6225185 (+) True trnas-gcu_3
trnal-aag_3 other upstream 394545 6224025 ~ 6224106 (+) True trnal-aag_3
trnas-gcu_2 other upstream 395034 6223536 ~ 6223617 (+) True trnas-gcu_2
trnal-uag other upstream 395853 6222717 ~ 6222798 (+) True trnal-uag
TU227356 other downstream 102674 6725321 ~ 6728391 (+) False LOC113527389
trnap-cgg_4 other downstream 148660 6771307 ~ 6771378 (+) True trnap-cgg_4
trnap-ugg_14 other downstream 149794 6772441 ~ 6772512 (+) True trnap-ugg_14
trnal-uag_1 other downstream 150956 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_15 other downstream 152109 6774756 ~ 6774827 (+) True trnap-ugg_15

Expression Profile