RNA id: XM_026914764.2


Basic Information

Item Value
RNA id XM_026914764.2
length 7372
RNA type mRNA
GC content 0.42
exon number 13
gene id aatkb
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18300226 ~ 18348357 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGCTATGCATCTCTCTCCGCTGTGTGATCTGAAATGTATGATTTTCTTGTGTCATGCTTGTGCTGACACTGAGGGAGCTTCAGCAAGGGCATTTAGGTCAGAAGTTATTAAGTGAGGGTGCAGAAAACAGTACAGGTACCCTCAGGTGTTATGGCTGTACTATTGACACACCATAAGGAAATAAGGTCCAATATGTGGGCTATCAGTAATGGGACAAGGAGTTCGAGAATGCAGAGGGAGATGAATACCAGGCCGACATGTCCACGCTGGCATCGCCAGCCTCTGCCGGCAGCCCTGATGTCTACGTCCTGCCTCTGAGTGAAGTTTCACTGCCTGTCGCCAAACAACCAAGCCGCTCAGTCCAACTCCTGAAGTCAACAGATGCATCTCGCCACAGTTTGCTCTACATTAAAGAGATTGGGCATGGATGGTTTGGCAAGGTGTTGTTGGGGGAGGTAACCTCTGGTCTCAGCAGTACTCAGGTGGTGGTGAAGGAGCTCAAGACAAGTGCCAGTATTCAGGACCAGATGCAtttcttggaggaagcacagcCTTACagATCTCTGCAGCATCCTGCTCTAGTGCAGTATTTGGCTCAGTGCACGGAGGTCACGCCCTACCTGCTGATCATGGAGTTCTGTCCTTTGGGCGATGTGAAAGGTTATCTGCGCAGCTGCAGAGCAGCAGACTCTGTGACTCCTGATCCTTTGCTCCTTCAACGAATGGCATGTCAGATCGCTTCTGGCCTTCTGCATCTCCACAAACATGATTACAGCCACAGTGATCTGGCTTTGAGAAACTGCCTTCTGACATCAGATGTTACTGTCAAGATCGGAGATTATGGCCTGTCACACAGCAAGTATAAGGATGATTACTTTGTGACATCGGATCAGTCCTGGGTACCATTACGCTGGATTGCCCCTGAACTGGTGGATGAAGTTCATGGCAACCTACTGGTGGcagaccaaacaaaacaaagcaacatTTGGTCTCTTGGGGTAACTATTTGGGAGTTGTTCGAGTTGGGGAATCAGCCTTATCGACACTACTCTGACAGGCAGGTCCTCAGCTTTGCTGTAAAGGAACAACAACTTAAACTTCCAAAGCCACTGCTTCAGTTTCCTCTTTCTGACCGGTGGTATGAAGTGATGCAGTTCTGTTGGCTTCAATCAGACCAGAGGCCTAATGCTGAGGAAGTTCACCTACTGCTCAGTTACCTGTGTGCCAAAGGTGCCAGTGAGGCAGAAGACGATTTTGAGAGGCGCTGGAACTCAATGAGACCTAACATGACTCATGGCAGTCTGCACGGGGCTGGTCCCCTGACCCTGGAGATGCCGCAATCCTTGACAGCCTCATCCTCATTCCCCTTACTGGAGCAATTTTCAGCTGGTGATGGCTACCAGTCAGAGTCAGGAGATGACATTCTCACAGTTACTGAGACCAGTCATGGTCTGAACTTCGAGTACAAATGGGAACAAGCAAGAGCTAAACAGCCCTATCCCTCCTCATCCACCACTGGAACATTAGGTCAAGGGAATCCCCATTGCCAGGAGGTCTATTATCCTCCAGGAGGTATGGTAGGTGGATGTGGGATTGATGGACTCACCTTAGGGGTCTCTCCCCAATACTATGACCCCAAACAGTTACACACTCCAGGTGTTGTTCCAGTTCTCAGTGCTCATAGTCCTTCAGTGAATAGTGAGTATTACATTCGTATTGAAGAGCCAGTAGAATGCAATATTGACATGGAATACACAATGTGTGCATACAGCCCTGAATTTGGGGGAAGCAATGGCAGCTTTCTCACTGGTAGTGGAGACTCAGGGGATTGTATGAACTGCCCTTCTAAAGGCAAGCCAATTGAAACATACTGGTCAGCTGACATCCATAAAAGAAGTGCCTATGATTCAGACAGCAGTCCAACCATGTCCCTAACTATGGAGCCACTTCTAGGTCAGGTATCTGATTCCAGCCCACTTAGGCCTTGGGAGTCAGGTCATTATGTATCATACAAAGACAGGGATGGAGGCTATTACTATGAAAACTCACCACCACTGGGTATGGATCACTACCTTATTGGATGCCCATCAGAACCCATGAGGGAGAGCTGGGGGTCTCGAAGCCTGAGAAAGGCACTGGGTGAGCTAGAGGAACCCTTGGGGATCTCACCATCCCTTGGCAGCCCCCCACAGGGCTATGGTGACCCTTACATAGAGAGCAGCCAAGGGTCAGTAATTGGGAAGAATGTAACTGGAGGATACTATGACATGATGGGTTCTTTAAGAAAGATCATGCCAGGGAACCACTCAGTGTGTATTGACATGGAATCAGGAGATGCTGTGTTTGTGGGGCAAGATGACAGTGActcagaagaggaggaggatctATTCATTGAAAGGCAGGCAATGGGCTGGTCCACCAACCATTCAGCAAAAAACAATTTGAGATTGTCTCAAATACAGTCATCAAAGCAAGATGCATATGTAGACTTTCATTACACTATGCCAATGACTGATGTTGAGGATGCGTGGCCAGAGAACCACAGTCTCCCATACCGCTCTACCAAAACGCTTAACTACCTGGAAGGTAGAGCCAAAAGCAACACCTGCCCTGTGCATGGCAGACAAGCATCAGTATCCTCAGCAGACTGCAGCTCCTATATTCATCTATGTCATGAACCCAGAGAAGCAGAGGTTTACCCTGTCCCTTGTTGTCAGGCTTTGAGCAATTCCCATTTTGTAGATCCTCTTACAGGGTCGTTAGTAAGAAATTGTTTCATGAATGACAatatttcagacaaaaacacaggCGTAACCAGCAGGAACCCACAGGTAGGCCAAGCTGCCTTACCTACAGgacatttaatttccaaatcAGAGACAACAAAATCCAATTTAAAACAGACCGAACACCCAGAATATGTTGACACTGGGGTCAGAGAGGGAATCTATAGACAAGACAGTACTGGACAAAAAGATACTAGTCAAATTAACAGGAAAACCGAGGTTATAACCATAACTCAACAAGTGGAGAATACCCTTCCTGAGATCTCTTCCAAAGAGCCTGAATCAGACAGAAGCAAGATGGTGGACAGTGGCGTGGAACATGGACATTCTAGCACCAGCCTTGTGGAAATTGACAATTGTAGTGATGATGACATCACAGATGTCACCTCTGGGATTTTTGGTGACTTCCAAGGAGATTATGCAGAGACAGCTGACTACACCTCCCCTTCATTCAAGTCATTGCAGAAGCAAGTAGGTACACCTGACTCCATGGATTCCATAGATCTACCATCTACTGCAGGCTCCAGTGAGACTCTGAGCCCAACCTCTCTCCACCCTTCAAATTCACCTAGAGCTGTGGATAGTGGCTATGACACAGAGAACAATGAGTCTCCTGAATTTGTCCTCAAGGAACCCCATGAACCACAAGACACCAAAGCCTTTATCCAGCCACTCGGAATGTCAGTCCCAGACTCAAGTCCAATCAAGGAAGCAAAAGAAGAAGATGGGTCTGACACACAACAAGAGGATGTGGAGGATGTGGAGGAAGGAGTCGCCATGAAAACATCTCAGAGCACTGGAAGGCTGACAGTACTAAGTGAGAAAACCCCATACAGAGATTCTGCTTACTTTTCTGATACTGATgcagggaaagagaaagagagtgatgaagacagagagaaagatattgATGATCTtgagaggaaggaggaggaagcAATGCAAGCAATAGGCCAAACAACACTACCAACACCAGTGATAGAGCAAGACAAAGAAAAGTCAAATGTTCTGGAGACAGAAGAAAACTGTGAAAATTTCTACAATGATATTCAGGAAGGGACCCAAAAAGCTCTACCCTCAGAAGAACATGAAAAGCTTTCCCCTAGTTCCCCTGAACCAACTattatttcttctgtttctccTGAGATATGTGAATGCCCTATAAATGACACTGTCCAGGATGAAGGCTTTGACCTGAATTCAGATGATCCTCAAGAAATGCCATCTGAGAATCAGTTATCTGATTTAACTGCCTTGCCATTTTCTGATACCAAGCAAGAAAACCACAAAACTGAGGAGACAGACACCACCCTTGCTTTTGAACCATCACTGGCTAAAATTTTAGTTGAAGACAGTAATATTGAGACCAGTCTTGATAGCTTTATCAATGCAAATGAAGTAAACCAGGAAAAGCAAGTTACTGAAGAAGCAATATTCAGAACTAGTTCAGAGGTACTATCAGCTCAGGACAACAATGACGAAGTGGAGATACTTATACCTGACTCAGCCAAGAGTGTTTCAACAGATAATATTGTGGACAAGCCTGAAACTCCAGATGGTAACACAAAATATGGATTTCAGTTTCACAAGAGCTCCACTCgtccttcctctcctcctcctctcccatCACTTGAGGGACGAGTGTCCCCAGTGGAGAGAGGAGAAGCTGATGATGAGGACAGGGATTCAGAGGATAGTGATGAATCAGATGAGGAGCTACGCACCTATAGTATCCAGGAGCAGAGTGAGGAGAGTGAGGATGAAATTCTACCTGTGCCCATCATTGTGAGTGACTGCAGTGATGCACACAAACTCAGAAGCCTCCTCAAGATGCCCAGCTTGTGCATCGATAACCTTGGTGATGAGTTGGAGTCCAAGAAGAAGGTGGTGTCCTTCTTTGATGATGTTACTGTCTACTTGTTTGACCAAGAAAGTCCAACCGGAGAACTATCAGAACATGCCTTCCACCTGGGAGGTGAGACAAGCAAACAGGGTGCAAGGTGCACAGATTCAAACCAACAGGAAAAGGCCAATTCCACTGATGACTCTTCAGATGGAAACATTTCAGAAGAGAGTACAGGGTTTGAGTGGGATGATGATTTCTCTTTGCTGCCACTACCCACCTCATCAAAGGAATCACCCCCAGACATCAAGGCTAAACCAAGCCTTCCACCCAGTGACACAAATAACAAGCCAGTAGAGCAATTCTCACGCTTCACAGTTTCTCCATCCCCAATTTCACGTTTCTCCATTACCCATGTTTCTGACTCTGATATGGATTCTGCAGGAgGAAGCAGTGAGGATGGGGATAGAGAATGAGCACTGCACACCACTGCCATCTATGTGGAGTGCTTTGCATGGACCTCTTTTCTTCACACCTACTGGTCTTTACATTGAAAATTATActgtttcagaaaatgttcGGGATCCCATCAAGGACAGTGCCTATTATTGTTTGCAACTAGTTACACAATGGTCATTAATGAACCAATCACAAATGAACACGTCTGTGGCCATTTGCTTTTTAAGAAGAATATTATAAATTGTGAAAATCTCAAGTAATACCATATTTGTTAAAATTCTACCTATTTTAAACTAGTGACAATTTTGAAAGAACTACAGTATATGGACTGTGAAGACATGGGATCTTTATAAAAGACATCACATATTTTCATGAATGATGGGTAAGATCTTGAAATGAAGGATacaatcaacatttttttccagaaaaaattGTAAAGCAAATCAAGAGAATTTTTTTCAaggactttgactttgactgtgaAGTAATGATGAACTAATGAACAATGTTGCTAATAATGATTTATGTTGCTAAAGGAAGAGAAATTAAGTGAGCCTACTGTTTGTCAATGGCTgattttgttagatttttttttttttttttttttttttttttttttgaaagcaaaCTCACCTTCTTTTTACATTCTATTTCTTTGATTGGGTATCAGAGCAACAGCCTTGTGCCTATGTCACATAACAAAAAGTGGCAGACTTTTACAAGCTGCTTTAAAATGTTGGCGAGAGATGAAACACATAGCTGCCTTGAGTCAGCCATCTACTTGTAAGTAGCAGATTATACAGGGTCATGAAACATCATGATACTTAGACCAGCTCCTTCATGTTATTACAAATAAGATCTCTAATGAAATTCATATCTTTTGTCATTGTCTTAGATTTTTGGAGAGGCAAAGTTTGCCTGGTTGATGAATACAGTTCTACGAACTACTTTTTCAGTACttacttattattttaatttaaattattgtcAGTATCATGCAAAAAAGATTAATGGTTTTCAAAATCATGCTTTGCCGTCTACCCTGTCTTGGTTAAGCTTTAATAACCTCAATTCTATCTTCAACCGTGCTCACAGTTGCCCATAACataaatcttatttaaaaagGTTGCATTTTGGCCCTAGAATGAGAACTGCTAAAGAAACCCAAAAtgggaaaaaacaacatgatcATTTTAAATGCTTGAGAACATAGTTCTTGGTACTGGAccctttagtcctttagtctgtaaaacatgcattttatgCTGAGCATGTATAACTGATGCTGTACATGTCTGCTACCTTTTGAGGACCAGAGCTGGGATGTGTTATCTTTAGGGTGTTtataacaattatttttaatttaatacatgaTGCCTGTCTTGTCACTTTTGAGAAATTTATAAAGTAATAGAAGGGAGAAAGACATACATTAATGGCATTTAATGCACAGCCTATGGACAATGTATTATTATGGTTATTTATTAGAATAGACAGAAACTACTGAACAAAATGTACTGTACTGATTGTTAAGTTGCAGAATTACTGTCCAAATTaagttttctttttacattttcttgtgaacattgttgggaaaaaaagtaattttctcTATTAGTAAGAAACTGTTTGACAAGATAAAGAGGAATTTAATGCACTCTGTAGATTTCTGTACTCTGGACctgggaaagaaaagaaaaataccaTCCTAACAATCCTCTCATGTTCAATGTTTGTTTGCCTCTTATGGCATCACTGTTCTAATTAGGTTAGCCTAGATTGAACTAGACAGCAATCTGTACTATTTTTGTATTCTatgaaacagttttaaaatcCTAAACTGTATTATAATGTTGCTGGACTGTAAGAGTTTATCATCATATATCTGCTGCCAAAGAGAAGCATTCTACTGGTACACATGGGGTTGTTGGCTGGAATTGCTGGACACCAACATGACTTGATAATCATGAGGTGATGGACAATGTTCTTTCCTATGACTGTATTCATATGAATTCCAGCAAAAAGGGTCTCAGTCATTAGAATTCCCATGAATTTGTGTGAGATTATGGTGATTTACGGTGAAGGAAATCTTGTAGTTGAGTGTTGTGAGCAAAGATGTGGTTGAATGATGCTATGGTGTAGGAATTTAAAGATATAAATTGGTTGGGTTAAATGTTATGTGAAGGTTCCCATAAGTATCTGTCCCTCTTGGGTGTCACATGATCAGTGACTgtacacaaacaacaacaaaaaaaaataaattaattgtttgacatcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234782 lncRNA upstream 148479 18161674 ~ 18177516 (+) True G198282
XR_004579322.1 lncRNA upstream 158619 18162718 ~ 18167376 (+) True LOC117598699
TU234779 lncRNA upstream 186952 18138151 ~ 18139043 (+) True G198279
TU234706 lncRNA upstream 340527 17985163 ~ 17985468 (+) True G198213
TU234664 lncRNA upstream 388224 17937532 ~ 17937771 (+) True G198177
TU234820 lncRNA downstream 607 18348964 ~ 18349413 (+) True G198311
TU235279 lncRNA downstream 69726 18418083 ~ 18419984 (+) True G198722
TU235326 lncRNA downstream 177311 18525668 ~ 18531296 (+) True G198767
TU235395 lncRNA downstream 331816 18680173 ~ 18698503 (+) True G198818
TU235453 lncRNA downstream 355118 18703475 ~ 18703699 (+) True G198876
XM_026914769.2 mRNA upstream 35435 18281479 ~ 18290560 (+) True st6galnac
XM_026914770.2 mRNA upstream 35435 18281479 ~ 18290560 (+) False st6galnac
XM_034309219.1 mRNA upstream 35435 18281503 ~ 18290560 (+) False st6galnac
XM_026914771.2 mRNA upstream 54485 18258971 ~ 18271510 (+) True LOC113527195
XM_026914767.2 mRNA upstream 71576 18227385 ~ 18254419 (+) False cep131
XM_026915375.2 mRNA downstream 73196 18421553 ~ 18429688 (+) True LOC113527495
XM_026915376.2 mRNA downstream 149888 18498245 ~ 18507858 (+) True bnip3
XM_026915613.2 mRNA downstream 265834 18614191 ~ 18702757 (+) True LOC113527622
XM_026915614.2 mRNA downstream 265834 18614191 ~ 18702757 (+) False LOC113527622
XM_034309113.1 mRNA downstream 457720 18806077 ~ 18812262 (+) False si:ch211-221j21.3
TU234778 other upstream 167366 18155151 ~ 18158629 (+) False pde6gb
trnai-uau_6 other upstream 748619 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 1462500 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 4767482 13483301 ~ 13558513 (+) False tcf7l2
TU235296 other downstream 93529 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 457728 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 457766 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 1178285 19526642 ~ 19566684 (+) False LOC113527713
TU237322 other downstream 3654467 22002824 ~ 22003274 (+) True G200571

Expression Profile