RNA id: XM_034309219.1


Basic Information

Item Value
RNA id XM_034309219.1
length 2106
RNA type mRNA
GC content 0.42
exon number 10
gene id st6galnac
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18281479 ~ 18290560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgtgtggacCTCACAGTGCAAGTTGGATTGCTTTTCTGTCTACTAGGCTGTGTCTGACAGGAATTTCATCTCTAAGATGATAATTTTGCGGCATCAGAAGAAGCTTGTGTTGTTCTTCCCGGTTTTGTGCTTTGTGGCCTGGTTCTACCTACTGGGCTTGAAGAGTGGTCATCAGAGCAGattACAGGACTCCAAAGGATACATGAACTACTTTTTTTCTTGGCATGATCTGTGGTCTCTCAACCCTCTCTTTAATATGGGAAATAAAAAAGGACAGATAAAAGACCGACTTACAAACTCCAATGACAGAGTAGTGGGTGTTCATTCAAATGCAACCAAAAAAACTTGGATCGAAATGGTGCGCCAACCTGATGATTCTCCAGTGGACCCTTTTAATCCAGAACTAGACTTCTTGGGAGACAAATATGCAATCGATGATTATATGCTACAAACTAGATGTCCTAGCAGCATCCGTAAAAAGGTGTTGCAGACTGACTTTGCTAAGATGTTCTTGTCCAGTGTGCCAGTCCTGCAGTGGGCGAAGCATTTCTCTAAGGCAGAATATGAGCGGTTATCCCACTACCGTGGTGCCCACGGATGGGGTAGTGTCAGTGTTGATGttttgaATGAATCTCTGGCCATCTTAAACACTTCTGCAAACCGGCTGATGTTTGACGACTGGGAGAAGAGCAAGAGCCGATCGCAGTGTATCCGCTGTGCTGTGGTTGGAAATGCAGGAATCCTGAATGGGTCAAAGAAAGGCCTGGAGATTGACAAGAACGACTACGTATTCAGgACAAATGGTGCAGTTATTAAAGGCTTTGAGGAGGATGTTGGCTCACGTACCTCTTTCTACACCTTCTCCACGAACACCTTTCGCAACTCTTTGAGAAGTTATGCACGTGTAGGCTATAAAAGTGCTCCACAGAGCAAGGAGACCAGGTACATTTTCCTGCCTGATCATGACCGGGACTATATTCTCATGAGAGCTGCATCCTTGCACATACCAATCACGAAAGGCAAAGACCAGAGTTCTAAGCCTCCCAAATATTTTGGATCTAATGTAACTGTAGAGAAGTTTAAAATGTACCACCCCGACTTCATCCGTTACCTCAGAAACAGGTTTCTGCATTCGGGCAGACTCAAAACCAAACTTAGAAACATCTACAGGCCGTCTACAGGAGCCGTGATGCTGCTGGCCGCGCTTCATACGTGTGACGAGGTGAATGCCTATGGATTTATGACACCAGACTACAAGAACTACTCAGACCATTATTACGACAAAATACATCACCAAGTACATTTCTACGCCAACCATGACCTGCGATTGGAGTTGAATCTGTGGCAGAAGCTGCACAAGGCAGGACTGATAAAGCTCTATATGCGAACATGATCCTAACTCTAACGAACCAAACTGGACTCTATGGCGTCTGATCCCGCTCAGGATTTGAGGATATGCTGCAGATAAAAATCTTGTGACATTTTATTACCTTTGGATTTGGCCTACTTCACCTAAACATAAGGGTAAAGGTAAAGGCAAGATTTATTTAAGATGTATTTATAAACTTTTTAAACTACATGACCTGTAAATCAGTTCAGGTACTGTGAAGTTACAGCTGGTGAAAATGGTGATGACCTTTTAACTGTGTTTAAAGGGCCAAGGTTCCTAAAAACTTGGTGAACATGTGTGACCTGTGTctgtgacctgtgtgtgtgtgtgcgtgtgttaaaTGAAGGAAGAACTGTGTGAGTGCGAGTTGTAATTCAGTACCTCAAGTTGTAGAATCACACTGATGAAGATTCTAATATAAAGTTTATACAagataatttatatatttgtggaAAATCTTTAATACTTTCATGCCAAGTAGGTAACCTTTTTAAGACAGGGAAAATATTATGAAGGCTATATGTGGATGATAGGGCTATAGACAGAAATAACAGCTGATGAAAATGTCAGAGTATATTTCCTTACACACATGCCAGGAGGTGAAGGGCTTCAACTAAGAGACACTTTTGCTtttcttgaggaaaaaaaaaaaaaaaaagactcgtTTTAA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234782 lncRNA upstream 103987 18161674 ~ 18177516 (+) True G198282
XR_004579322.1 lncRNA upstream 114127 18162718 ~ 18167376 (+) True LOC117598699
TU234779 lncRNA upstream 142460 18138151 ~ 18139043 (+) True G198279
TU234706 lncRNA upstream 296035 17985163 ~ 17985468 (+) True G198213
TU234664 lncRNA upstream 343732 17937532 ~ 17937771 (+) True G198177
TU234820 lncRNA downstream 58404 18348964 ~ 18349413 (+) True G198311
TU235279 lncRNA downstream 127523 18418083 ~ 18419984 (+) True G198722
TU235326 lncRNA downstream 235108 18525668 ~ 18531296 (+) True G198767
TU235395 lncRNA downstream 389613 18680173 ~ 18698503 (+) True G198818
TU235453 lncRNA downstream 412915 18703475 ~ 18703699 (+) True G198876
XM_026914771.2 mRNA upstream 9993 18258971 ~ 18271510 (+) True LOC113527195
XM_026914766.2 mRNA upstream 27084 18227385 ~ 18254419 (+) True cep131
XM_026914767.2 mRNA upstream 27084 18227385 ~ 18254419 (+) False cep131
XM_026914768.2 mRNA upstream 28701 18227382 ~ 18252802 (+) False cep131
XM_026914591.2 mRNA upstream 62866 18185338 ~ 18218637 (+) False rnf213b
XM_026914762.2 mRNA downstream 9666 18300226 ~ 18348357 (+) False aatkb
XM_026914763.2 mRNA downstream 13416 18303976 ~ 18348357 (+) False aatkb
XM_026914764.2 mRNA downstream 35435 18325995 ~ 18348357 (+) False aatkb
XM_026914765.2 mRNA downstream 40959 18331519 ~ 18348357 (+) True aatkb
XM_034309218.1 mRNA downstream 44938 18335498 ~ 18348357 (+) False aatkb
TU234778 other upstream 122874 18155151 ~ 18158629 (+) False pde6gb
trnai-uau_6 other upstream 704127 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 1418008 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 4722990 13483301 ~ 13558513 (+) False tcf7l2
TU235296 other downstream 151326 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 515525 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 515563 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 1236082 19526642 ~ 19566684 (+) False LOC113527713
TU237322 other downstream 3712264 22002824 ~ 22003274 (+) True G200571

Expression Profile