RNA id: XM_026914771.2


Basic Information

Item Value
RNA id XM_026914771.2
length 2348
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC113527195
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18258971 ~ 18271510 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgagagagagagagagagagagagcgcgcgcgcgtgtgtgtacacgtgtgtgtacacgtgtgtgtgtacgtgtgtgtgagagtgagtgtgtatgtgtgcgtgtatgtgtggaATCGGGTTGCTTGGCAAACAAGTTTACAAACATTTATCTACAAGTCGGGGTCTGGCAGGAGTTTCATCCCAGAGGCAGCATCCGGTTCCCCCAGGTGTTGTAAGGCCACTGGGATTAATGAGGAGAAGACGACACTGTGCTTTCCTGCTTCACTCCTCACAATCCTGATGCGATAGTCTAATTCGTTTGTTCCAGAAGAGTTCCCATGACCTTTCCAGGTGGTCAGGAGCTGAGATCATGTGTTtcctgtataaaaaaaagttggttttctccttcctgtttttgtttgtcgTGCTTGGGTCCTACATTATGCATTCAAACGTGAAGATTTTGCCGTGGCCAAAAGACCAAACGATTACCCCCAATCTCCCCAGCTCTGTGGCTGAAAGTGCGCGTCACACAACCAGATCTCCAGAGGATCCACCAAAAACAACCAAGCCCACAGCCAAGCCCACAGCCAAGCCCACAGCCAAGCCCACAGCCAAGCCCACAGCCAAGCCCACAGAACCAGACTCCTCTGGAGACAAATACGCCAGTGATGACGATCTACCCCAATCTAGCTGCACAAGCAGTATTCGGAAAACGGTGCTGCAGACTGCCTTTGGTGAGAGGTTCTTGGCCAATGTGCCAGTTCTGCAGTGGGCGAAGCATGTCTCCAAGCAAGAATACGAGCGCTTACGCCGCTATTATGGCGCTCAAGGGTGGGGTAGCGTCGATTTCAAAGTTCTCCAGAATTCACTGGCCATATTAAACACCTCCGCTAATAGGCTGATGTTTGACGACTGGGAGAAAAGGCAGAACAGATCCCAGTGTATCCGGTGTGCTGTGGTAGGAAATGGGGGAATCCTGAAAGGGTCCAAGAAAGGCCGGGAGATTGACGAGAACGACTATGTGTTTAGgACAAATGGTGCAGTTATTAAAGGCTTTGAGGAGGATATTGGCTCACGTACCTCGTTCTACACCTTCTCCACGAACACCTTACAGAACTCTTTGATAAGTTATGCAGACTTGGGGTTTAATGCCCCCCCCAGGAGCAAGGAGACCAAGTACATTTTCCTTCCTGATCATGACCGGGACTATATTCTCATGAGGGCTGCAGTCATGCACACACCAGTCAAGACAGGATCTGACCAGGGTGTTGAGCCAGCGCAGTATTTTGGAGATAACATGGCTGTAGAGAAGTTTAAAATGTACCACCCTGATTTCATCCGTTACCTCACaaacagGTTTCTGCGTTCAGACACACTCGATAccatttataaaaatatctacAGGCCGTCCACAGGAGCAGTGATGCTGCTGGCCGCTTTTCATACATGTGACGAGGTAAACGCCTATGGCTTTATGACGCCGGACTACCAGAATTATTCAGACCATTACTACGACAAAACAGTCCAACCAGTACTTTTCTATGCCAACCATGACCTGAACATGGAGCTGAATCTGTGGCAGCAGCTGCACAAGGCAGGACTCATAAAGCTCTACATGCGAACGTGAATGCGGTGAGCTTACTCGGACCCAAATGAAAACACAGCATGTCTGATCCCTCGCAGGAACTGGGGTGTTGTATGCTGTAGACAAAAACCTTGTGATGTTTATGGCCTCTGGATTTGGCCTGCCTCAGCTAAAGTGTGTTAATGAAGAAGACAGTCATTTCTTTATTGCCTCATATATCTCTTCAGGAGCTGGGACAGTGTTGGAGTTACAGTGGCAATAAACTTTAACTCATTCTGATATGTCAGTATAAGATGCCTTAatgcaaagtgaaaaaaaatgccAAGTGTTGGCCTAGTTGAGTGaattgatgtgtgtgttcaatGAAGGGAGTACTGTGCAATGATGGCTTGTAATACAGTCCCGGAAGTTTTAACAACCAAAACCAAAGACCAAACATTTATGTCgagaaacatttcaaaaacttGTGTGCCAGTTGCTGTGCAACTTTACACAATAGCCTAAATATCAGTGGACAATGAAGAATTCTTTTACTACCTCtaagaagacagaaaaaatacTTGGTAGTAGCGGCTAAGTAGATTCTCTCAGAAATATGCCAATGAGTGATTGTGAGTCAAAACAGACTGACACTGAAGTggtattttgtaattttataaattattaaggTACTGGGTTTTTCTTGGCATGTGATTCAGTTTTTGTAAATAGTGCAGTTGTCATTTAAAGTGctattttgttcattaaaaggaaataaaaaactCTAAAATGCGAGTCA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K06616 SIAT7B, ST6GalNAc II; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234782 lncRNA upstream 81455 18161674 ~ 18177516 (+) True G198282
XR_004579322.1 lncRNA upstream 91595 18162718 ~ 18167376 (+) True LOC117598699
TU234779 lncRNA upstream 119928 18138151 ~ 18139043 (+) True G198279
TU234706 lncRNA upstream 273503 17985163 ~ 17985468 (+) True G198213
TU234664 lncRNA upstream 321200 17937532 ~ 17937771 (+) True G198177
TU234820 lncRNA downstream 77454 18348964 ~ 18349413 (+) True G198311
TU235279 lncRNA downstream 146573 18418083 ~ 18419984 (+) True G198722
TU235326 lncRNA downstream 254158 18525668 ~ 18531296 (+) True G198767
TU235395 lncRNA downstream 408663 18680173 ~ 18698503 (+) True G198818
TU235453 lncRNA downstream 431965 18703475 ~ 18703699 (+) True G198876
XM_026914766.2 mRNA upstream 4552 18227385 ~ 18254419 (+) True cep131
XM_026914767.2 mRNA upstream 4552 18227385 ~ 18254419 (+) False cep131
XM_026914768.2 mRNA upstream 6169 18227382 ~ 18252802 (+) False cep131
XM_034309271.1 mRNA upstream 32159 18185338 ~ 18226812 (+) True rnf213b
XM_034309272.1 mRNA upstream 38038 18185338 ~ 18220933 (+) False rnf213b
XM_026914769.2 mRNA downstream 9969 18281479 ~ 18290560 (+) True st6galnac
XM_026914770.2 mRNA downstream 9969 18281479 ~ 18290560 (+) False st6galnac
XM_034309219.1 mRNA downstream 9993 18281503 ~ 18290560 (+) False st6galnac
XM_026914762.2 mRNA downstream 28716 18300226 ~ 18348357 (+) False aatkb
XM_026914763.2 mRNA downstream 32466 18303976 ~ 18348357 (+) False aatkb
TU234778 other upstream 100342 18155151 ~ 18158629 (+) False pde6gb
trnai-uau_6 other upstream 681595 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 1395476 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 4700458 13483301 ~ 13558513 (+) False tcf7l2
TU235296 other downstream 170376 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 534575 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 534613 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 1255132 19526642 ~ 19566684 (+) False LOC113527713
TU237322 other downstream 3731314 22002824 ~ 22003274 (+) True G200571

Expression Profile