RNA id: XM_034309427.1


Basic Information

Item Value
RNA id XM_034309427.1
length 2586
RNA type mRNA
GC content 0.43
exon number 12
gene id narf
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 16890364 ~ 16899730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGAGGTTGTAGTGCGCTATTTAAGGGCGTGAAGATTGTTACTCCTATACACTCTTCAAGTGTACTCGAAGAAAGAGTCAAGAACCAAATGGAGATTTGACCAATGTTACAAAGCGCCGTCTAGACTCTAGAGGAAGCTCAtggaataaattatttttgGGATTTCTTGCACAATGTCTGAGGATATCAGCacaaagagaaaggagaaatgTGAAAATTGCACTAAACAGTGCAAGAAGAAACAGAGCGATGAAGCTGTAAGTTCACTGCAAGACGGAGATGTTGCCAATGGAGAGGTGAGTGGTCAGCCTGCGCTGCTGAGCGCGTGTCTCTCCTGCGAAGGCTGTGTGTCTGAGGAAGAGACCCAGAAAATCTCCCAACAGAGCCTGCAGGAGATCAACCATGTTCTCGCACTCAATAAGaaatgtGATACCTCGAAGCACAAAGTCCTGGTGGTGTCTGTGTGTCCTCAATCATTGCCATTTTTTGCTGTGAAATTTCATCTGGACGTTGCGGTGGCTGCGCAAAAGCTGTGTGGCTTCCTAAAGAGTGTGGGAGTGAAATATGTGTTTGACACAACACTGGCTGCTAGCTTCAGCATTCTGGAGAGTCAGAGGGAGTTTGTACAGCGCTATCGACGCAGACATAGTGATGTCTATGCTATGCCAATGTTCACCTCCTCATGTCCAGgaTGGATCCGTTATGCAGAGCATGTGCTGGGAAGTCTGGTGACTCCGCACATCTGTACAGCGAGGTCACCTCAGCAGGTCATGGGCTCTCTGATCAAAGACTACTTCACCAGACAGCAGAAGCTGAGCCCAGATCAGGTGTACCATGTGGTGGTGGCTCCCTGCTTCGATAAAAAGCTGGAAGCGGTGCGAGAAGAGTTTTACAACAGCTTGCTCCAGACAAGAGATGTGGACTGTGTGCTTACATCAGTGGAAATTCTGCACATGATGGAGCAGAGTAATGTCTCTGTGGAGGACGTTGAACCTGTTCCTCTGGAccatgtgtttGGTGAGATCAATGACACAAGCTTGATGAGGCATGAGGGTCGAGGCTCTGAAGGCTTTCtagaacacattttaaaatatgctgCCAAAGAGCTCTTTGGCCTGGATGTTAATGAGATTGTATACAAGACACTCAGGAACCGAGACTTCCAGGAGGTGGTGCTAGAGCGTGATGGAGAGACACTGCTTCAGTTTGCTGCAGTCTACGGTTTCCGGAACATTCAGACTCTCGTGCACCGCATGCGGAAAGGCAAAGTGCCCTACCAGCTAGTGGAGGTTCTGTCCTGTCCTGGAGGTTGTTTGAGTGGGCGCGGACAGGCagagggagaaggaggaagGCCTGATCGAGCTCTGGTCCAGCAGATGGAGGAAGTGTACAGCTCTCTGTCCGTCCGGCTTCCTGAAGCCAACCCTGAAGTCCAACGTCTCTATGAGGACTGGCTGGAGGGAGAGGGCTCTCCACGTGTCCAGCAGACTCTCCACACTCATTACAACAACCACACACAGTCACCCTCAAACACCCCTGGTCCTGATATACAGTGGTGAAGGAGGCCAGAAAAGGGacctgttttatttctgtatgtcAGAGCAGAGTTTCACAGCTGGCAAACAAAAGGATCCAAGTAAAGATCAGGATGTGGCTATGAAAGACTTCCTGTTATAGGAGACATGTGACCTAGGAGACTTAGCAGCCAATCACACATCTGCGTTTTTAAGTTATGTAACTTTCCTGATGATCAATGAATTATAAGGGATATCATGATGTCATATGTCTTTTAATCTTAGAGTAAGCGCAATAACATTAGaccattatttaattaatcataGCTTTGGGTTACATGGACTATTAGTGCCTGTCTGGGATTGTTCCTAAAATAACAAAGTGCAAAAAGTGCTAAAATGTTTActggttattggtgccagagcataataaaaatgtatacactgaaataattaccctcacaattattatttttataaaactgtatatGGTTTATAAACCATAAAAGTCAATTGCTTGTCCTGGAATATTATTCTAATTTCATCTACCAAGGATCTACAATACTTAGCAAGTATATTTGAAtgaaaaagtttgcataccctcaGAACAAAATGAAGGAAAGACATTCATTTTATATGCACAAGACATTTTGgtttcatatattatttaatattctgtATGCCTTACTGCCTCCAAAGTTTTTTGTATCTACTTCCACTAAACAGCCTTTGGATCCTCAGCTGTAAAATTCTTCCCCATTCTTCTTGACCTCTGTTATAACTGGAAGCAGAGAGAGTTATGATAAAACTTAAtttgtgaaactttttttttttcctgtttattgtCTTGTTACATAAAGGGGTACACCCATAATTTAGTTGCAGATGAATTGTAAAATAGAAGTACATTTTTACATCCATAAACCatgggggatgtaaacttttgcacttatcTGTTTACAGTCATTCTTAAATTTGTTGGTAGAGAAATTGGTGGTTGAAAATGAATTCTGAATATCGCCACATGATGGCAATGTGTGTCCCTGTGATTAAAAACTCCTGGCCTAGCAGG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234113 lncRNA upstream 126037 16764008 ~ 16764327 (+) True G197726
TU234110 lncRNA upstream 126562 16758108 ~ 16763802 (+) True LOC117598690
XR_004579312.1 lncRNA upstream 126819 16758145 ~ 16763545 (+) False LOC117598690
TU234039 lncRNA upstream 391419 16498714 ~ 16498945 (+) True G197660
TU234038 lncRNA upstream 391703 16498435 ~ 16498661 (+) True G197659
TU234207 lncRNA downstream 7100 16906830 ~ 16907142 (+) True G197816
TU234194 lncRNA downstream 44216 16943946 ~ 16954011 (+) True G197803
XR_004579295.1 lncRNA downstream 131020 17030750 ~ 17043247 (+) True LOC117598668
TU234450 lncRNA downstream 428044 17327774 ~ 17327950 (+) True G198007
TU234451 lncRNA downstream 446286 17346016 ~ 17348598 (+) True G198008
XM_034309196.1 mRNA upstream 21935 16866210 ~ 16868429 (+) True ddit4
XM_026915554.2 mRNA upstream 26927 16855712 ~ 16863437 (+) False anapc16
XM_026914791.2 mRNA downstream 1663 16901393 ~ 16923228 (+) False slc9a3r1a
XM_026914790.2 mRNA downstream 1665 16901395 ~ 16923228 (+) True slc9a3r1a
XM_026914655.2 mRNA downstream 122995 17022725 ~ 17028922 (+) True asb3
XM_034309209.1 mRNA downstream 225454 17125184 ~ 17274561 (+) False nrxn1a
XM_034309211.1 mRNA downstream 225454 17125184 ~ 17274561 (+) False nrxn1a
TU234137 other upstream 26869 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 3331851 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 3331935 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 4416625 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 5604096 11286197 ~ 11286268 (+) True trnaq-cug_16
trnai-uau_6 other downstream 677553 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 1255421 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 1542156 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1906355 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1906393 18806123 ~ 18811512 (+) False si:ch211-221j21.3

Expression Profile