RNA id: XM_026914793.2


Basic Information

Item Value
RNA id XM_026914793.2
length 2183
RNA type mRNA
GC content 0.44
exon number 3
gene id dlx4b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6637355 ~ 6646574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttggaaatacgCGGTTCCTCGTTTGCCAAGCTGTCATTCCAATGGATTAGATTTAAGGTTTCGCGCTCGCGCACTAACCGGCCAACAAACTTTGACGCTGTCCGTCACTTTTATGGCCTCTGCTTCCAATGATGTCTATGAGCTTCGCGCCTGACGGCTTAGGTTCTGCGGATACGTCCAAATCGGCGTTTTTAGAGCTCGGCCACGGGATCCCCGCCAGCCAGCAGCACTTTTCGGGACTCGCGACTAACGTTTACCCCGCGCACGGGCTGCACTCGGGAGGACACCCGCAGCACGAGAGTCCCTTTCCCTCCGGCGCGTGCCACTACGGCGGGCCGCTCGGTTACGGCTACCCCGCGCCGCTCAACGCTCCTGCACCCGCTCCTACTTACTTACCCTACCAGCAGGGCAGCTACAGAAACCCACTGAGCCACGCGAGGAATGACGAGACCGatcaCGAGAAGCAGCCAGTGATTGAGAACGGAGAGATCCGTGTGAGTGGTAAAGGGAAGAAGATGCGCAAACCGCGCACCATCTACTCGAGCCTGCAGCTCGCCGCGCTGCATCAGCGCTTCCAGCAGACCCAGTACCTCGCGCTGCCGGAGAGAGCGGACCTGGCAGCCAAACTGGGCCTCACACAGACGCAGgttaaaatATGGTTTCAGAATAAGCGCTCCAAATATAAGAAGATCATGAAGCACGGCCCCACCGGACCTGAAGGAGATCTGCAGGCCGCCCGTGCGCATGCGCAGTCGCCCTGCTCTCCTGTGCTGCCAGCTCTCTGGGACGCGCCGATGGCTGGCAAAAGCGCGCACACGCATCCCGGCGGCTACATGAACAGTTTCGGCCAGTGGTACCCCTCATCCCAGGACACTTTACCCAGACCTCATATGATGTGACTCATGTGTGTTTGCTACCGACATTCTACCGGTATAGTGATTATACGACATGTGTCATATCGTGTAATACTGCATATCGATACAAAGTCGCGTCGGCAGGTTTCCCGTTTTCTGAGCGTTTGTGTTTGACCTCCATGTGAGAattcttttattaaagtgtaaatACGGTCGTGTGTTTAAAGGGCTTGTGACTTTATCCTTGAACAGGTTTTGTTGTCAATTGCTTGTTGATATTATTAGTCATCGGTGCTTTTCGGTTTTTATTCAGACTccattaatatttgttttgaatAAAAGGACTGATGAAAGGCTGCCAAACACTGTGTCGCCATGCcatgtgattaaacaaaattGTTGCCGAAGAAAATTCTGGATGAAgtccagacaaaaaaacactcaaaaaacACTCAATTAAACACAGATTAAACTCGCGACACAACATCTACTTCACTTCCCCTTTTTACTCAGGACTTTCAGTTCACTGAGCACTCTGCTAAAAAATATCTCCTATTTCTACACCATGTCTACTCACAAGACTTGCTGAAGAGTAACTCTATAATTCAggttaaaataacataaaattggAGCTTATTGGACTTTATTTGGCTTAATATTCTCTGCATTTGTGTTTTGCATCAAGCCTGACACATTATCCTTTAACTAAGCCTAACTTAATCCATGACCCAAATGATTTCATGTAATACAAATTGCTGAACACTTTCTACAGAATTCTATAATGTGACTTCAGAAATCATTTTAGAGAACACACAAATActgtaaaaatcacattcatTTCACAAGTTACGCCCCGAAACTGCACATTCTGTGAATTCAAGTAAACACATGACATGATGTCAAAATGttcaacacatttttcacaattaatgactgtacctttaatttcagatgtgatttttaaaaaaataattcatttattttcacatgttaatttttcacttATATTGcacacttttattttcacatgtgataataaatgtatgatgtgagaaaatcacatctgaGAAATTAAACTATATTCATCCTGTAtgtgaaatgtaaatgcatcatgTGAAAGAAAATCACACGTGAAAATCAAAGCACACGCACTGCACGTGACaaattaatgtgaaaataaaataaacttggAGAAAAATCACGtttcaaataataatacatgcacTATAATGTGCAAAACGTCACATGTAGTGTTTAAAAGACACATTGTGATGTTTTCATCTGTAAATTCTTGTAATTTTTTCCTGTAAGGGaattacattataa

Function

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0048666 neuron development biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227335 lncRNA downstream 14712 6621470 ~ 6622643 (-) True G192014
TU227332 lncRNA downstream 91102 6545032 ~ 6546253 (-) True G192012
TU227251 lncRNA downstream 148616 6463488 ~ 6488739 (-) True G191947
TU227400 lncRNA upstream 143292 6789866 ~ 6790153 (-) True G192070
TU227391 lncRNA upstream 149537 6796111 ~ 6796506 (-) True G192061
TU227392 lncRNA upstream 153068 6799642 ~ 6800076 (-) True G192062
TU227407 lncRNA upstream 161631 6808205 ~ 6809758 (-) True G192075
TU227408 lncRNA upstream 161631 6808205 ~ 6808795 (-) False G192075
XM_034309642.1 mRNA downstream 42965 6546941 ~ 6594390 (-) True itga3b
XM_026915558.2 mRNA downstream 124270 6507850 ~ 6513085 (-) True abi3b
XM_026915245.2 mRNA downstream 132626 6465015 ~ 6504729 (-) True LOC113527434
XM_026914996.2 mRNA downstream 176996 6437679 ~ 6460359 (-) False tbc1d12b
XM_026914995.2 mRNA downstream 176996 6437679 ~ 6460359 (-) True tbc1d12b
XM_026915153.2 mRNA upstream 81007 6727581 ~ 6740582 (-) True kat7b
XM_026915156.2 mRNA upstream 100478 6747052 ~ 6752732 (-) True g6pca.1
XM_026915154.2 mRNA upstream 110211 6756785 ~ 6766100 (-) True aarsd1
XM_034309520.1 mRNA upstream 189863 6836437 ~ 6847966 (-) False a1cf
XM_026915451.2 mRNA upstream 189863 6836437 ~ 6847960 (-) True a1cf
XR_004579320.1 other downstream 42965 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 861335 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1023401 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1163885 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1335150 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 1811753 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1828685 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2201088 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2430215 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 2430544 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile