RNA id: XM_026914798.2


Basic Information

Item Value
RNA id XM_026914798.2
length 1869
RNA type mRNA
GC content 0.49
exon number 11
gene id si:dkey-219e21.2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23426875 ~ 23436725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGACGAGAGAGATcgctcactctttctctcctgcctcctcctcctgacaCAGCTCCTGCCTCATCACGCAGCAAAGgagAACTTGTAACATTGCACAATATGAAGGGGATTCTTAAAGACAAATCACGGCTAGTGAATCATGTGGCCAACTTGGAGGGACAGAGCCACTCGATCGGAGCAGTGCGCTGGAATCTTCCGGAAGAAACGGTGCAGGTTCACAGCTCAGCTCCCAGCAGCCCTTTCAAGAGCAGCAAGAGCACCTCTTCACGCTCGCAGCAGAGACATCATCAGCAGAGTCTGAAAGACCTCCGCAGCCTGCAGGAGTGCATCAACTTTCTCAACAACTGGAAGTTACAGGTGGCACAAGTCTGTAAgAAGGGAAGTGACGGTGGAGAGGAATGTGCTTCATGTTCGTCAGATCGTCAGGAAGACCCTCGAACCGAGCGCAGTCTGGAGGAGAGCCGCAAACTCATCCTGCAGTGGGCTGATGAACTCAAGAGCGTCGACCAGGTATCTAAAGAGAGCCCGTGGCTGCAGGAGAGGTTCAAGCACAGTGAGAAAGAGCAGAAGAAGGAGGAGCATGGAGAAGTGGTGCAGCAGAGGGTCATGGAGTGGGCCAAAGAGCTGCAGAGTGTCTCAGAGAGCTGCGGCATGCTGGGAGATGAGCTGGCGCAGATGCTTCGTCTGCTCGGTCTGAGGAAGAAGAGGCTCGTTTCTTTGATGCCGCTGCTCGAGTTCATCACCTGGTCCTTACTGAAGGATGACAGCAAGGACGTGGTTTCTCAGCTGTGGCTTTCGGCCAAGCAGCGCTCCTGGGCAGCAGgCACACAACAATACATCCCCAACTCCGTGTGGAGTTGGATCACCAGCGCATCAGTTGAAGTTACCCTCGACCCGCTGACGGCCCACCCCTGGCTGCTGCTCTCTGATGATCAGAAGAAGGTTCAGGAGGGTCTGGAAGAAGCCGACCGGCCGTACAGCCCGCAGCGCTTCGACAGCTGGCCGTGCGTCCTGGGCTGGATGGGCTACACGAGAGGCCGCAGCTACTGGGAAGTGGATTTAGCAAACAACGGCTACTGGAGAGTCGGAGTCACCACCGCAGCCTCTAAGAGACACGGCCGCTTCCCCATGAAGCCTTCGAAGGGTTACTGGACACTGTGGAAGAGCACACGACAATTCTACGCCTGCACAGAGCCCGAGACGCCACTGCCTCTCACGCTGGTGCCCAGGAAGATGGGAATATACATCGACTACGAGGAGGGCCAGATCTCTTTCTACAACGTGGAGAACAAATCGCACATCTACACCTTCACGGGGCATTTCCGCGGGAAGCTCTACCCGCTCTTCGCCCCACTGGACGGGAGGACTGTCATGACGGTATCCTGTCCTGTAGACAACAGCGCTGAGTAAATTATTTTCCTTGTACcgaacactgaacactttattggCCTGTGCCTAATTCAGCATAGATTTCAATGTAGtagcattatttaatattttttatgtctGTTTGTCTTAAGATATTGTATATGCATGCACTATACTTTCTGACTTTCTGTCTATGTTCATTTATTAACGTGATTGCTGCTAGactgcactttattttataattattatgccTTCATGTGGTAAATTGAACATTGTTGCACCAGGGTGAGCATATCTacgaaaatatttttaaaaaatcatatttttcatattgagGACATCATTGTAAACAGACGAGAACTGATAGTAACACATGGAGGTTTGTTGTATTAGAAATCTGTTTGCTTTATTATCAATTAATAGCATTTTAATGCATATTGTGAATGTATTTTTgtcaatatatttatttaattgattaatgAAGTCAGAATAAGGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238025 lncRNA upstream 28215 23272574 ~ 23398660 (+) False polr2a
TU238079 lncRNA upstream 45885 23375074 ~ 23380990 (+) True G201234
TU238060 lncRNA upstream 113470 23312078 ~ 23313405 (+) False LOC117595720
TU238015 lncRNA upstream 157456 23268627 ~ 23269419 (+) True G201186
TU238014 lncRNA upstream 157456 23268792 ~ 23269419 (+) False G201186
TU238092 lncRNA downstream 23278 23460002 ~ 23460455 (+) True G201240
TU238120 lncRNA downstream 205682 23642406 ~ 23688417 (+) False afap1
TU238141 lncRNA downstream 263995 23700719 ~ 23729010 (+) True G201281
TU238144 lncRNA downstream 282323 23719047 ~ 23722939 (+) True G201284
TU238157 lncRNA downstream 301633 23738357 ~ 23740340 (+) True G201297
XM_026914512.2 mRNA upstream 6811 23402183 ~ 23420064 (+) True capgb
XM_034309273.1 mRNA upstream 28212 23381744 ~ 23398663 (+) True polr2a
XM_034309049.1 mRNA upstream 105647 23315593 ~ 23321228 (+) True LOC113527736
XM_026915816.2 mRNA upstream 105647 23315596 ~ 23321228 (+) False LOC113527736
XM_034309602.1 mRNA upstream 108721 23311260 ~ 23318154 (+) True LOC117595720
XM_026915767.2 mRNA downstream 10419 23447143 ~ 23459505 (+) True mfsd8
XM_034309526.1 mRNA downstream 29633 23466357 ~ 23472229 (+) True si:dkey-219e21.4
XM_034309028.1 mRNA downstream 104300 23541024 ~ 23600132 (+) True ablim2
XM_034309029.1 mRNA downstream 104300 23541024 ~ 23600132 (+) False ablim2
XM_034309031.1 mRNA downstream 104301 23541025 ~ 23600131 (+) False ablim2
TU238026 other upstream 28215 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 97304 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 220496 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 555591 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 1414571 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 945063 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 1224501 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1892485 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 2060991 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 2061456 25498180 ~ 25502628 (+) True G202374

Expression Profile