RNA id: XM_034309213.1


Basic Information

Item Value
RNA id XM_034309213.1
length 3208
RNA type mRNA
GC content 0.42
exon number 5
gene id mmrn2b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17868862 ~ 17878282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTGGACATGAGCATCTCAGCAGATCTGGACAACTGGATACTCAGCTGGAGACACCTCAGAGCCCTTTGCCCTTCTTGAGAGAGAGTTCACACCAGCCTGCACGCAGAGGAAACTGGTGTGCATTTGTCCATGAGCGTTTGGTAAGCGTGGTAGAGCTCAGTGATGCTGAGGAGCATATAGCGAAGTCAGTCAACCCCTGCATTAATGGTGACCCTGACTGCCAAATATTTAATGAGTCTGACAGGAGAAAGTCAGTCCAGTCtagaacacacagaaacagctCCAACAGGCGTTTCACAGGCTGATGACTCTGACTCTGgcAGTGGTGGAGCtattcctcctccttcttctctgCCTTTCATGGATTCCAGCAGCCTCTTGGCATTTCATCAAATATTTGCAGCAGTAATGACCCAACTTCAGCCAGTGCTGGATGGCTTTAATTGTACTTTGGAGAATTTGTCCAGAAAGGTGGAAGGTCTATCCATTGATCTGAAGAATCTGAGGCATGAGCAAGACAGCATGTCCAAAACTAGGCATGtccatgaagaaaaatgtgagaaaGGCTTAGAAGACAGCTTTGAACAGATGCAGCAGATATGGACAGAGTTGGACTCACAACAAAAAGAGATAGAACAAACAGTACACTTGCAACAAGAACATCTGCTTCATAACATGACCAGTCTAAAGAACAAAATTGACCACTATATCAACATGAGTCATGAGGAAATACAGGTGAGCTTACAGTCTCTGAATAAGTCCATGGAGAAAATTCGACTTGATCATGAAAGGCTGCAGGAGACAACACTGGAAGAACATGCTCTCTCAGTTAATGCCAGTGGAAGCCAGTCACTACTGGAGACCAGTGTGTGGGAGGCCATCAGTAGTCTGGACATGAAGGTGCTGAATAACACAATGGAGCTCAGTCCCCTAATTGAAAACTCCAAACATTTGATTAATATTGTCCAGAAGCAGGACCATGGCTTGAGGAACTTGAGTCAAAGACTGGAGTATGTCAGCCACAGCACAGAGGCCCATTTGGCACACATCGGGCTTGAAGTGGAGGGAGCTAGAGTGGCTACGCTGAAAATCGTTAATGAACTAGCTTCTAATCTCAGTATCCAAGAGAGAGATTTGCGAGAGATTCAACTTGACGTGGACAATATTTATCAGCATCTCCAAAATAATGAGCCCACCACAGCAGGCGAGATTTGCAGCTGTAAAGAAATCAGTGATTCATTGACTAGGTTAGAATCTGAGGTGGCTAATGTCACAAACTTCGCCAAAGAGAACCGGTATGCCCTGGAAGATGCCGAGGCAAAGAGGGGGCTTAGCCAGTGGGCCCCAGAAGTTGAAGATCTCCAGCAAGGTTTGTGGAGTGTAAGAGAATCACTAGCATTTGAACAAGTGAAGAGGAAGACTATTAATGACAACCTAGCCCAGTTAAAAACCTCCCTCCTGGACAGCCAAAAAGAGATTATAGGACTTAAAGGCCAATTTGTTGCTAAGGAAGCTGAAATCAGAGATCTCTCTGCATCATTCAGTTCTTTACTCAAGGATGCCATCCGCCACTCTGACATTCTTGAGGTGCTTTTAGGAGATGAGGTCATGGAGTTCTCAAGCTGGTCTAACAGCCAGCAGAAGGAGCTTGCTATTCCTGTACTGCTACAGAAAATGCGTCTGATGCAAGAAAAGATTGATAGTCATGAGAACAGCTTGACCTCTCTAAGGAGGAGCAGTACAGAGAAAGCTCAAATGACCAATGATGACCCTGTTGCATTCACAGAATGGAGCCTCACAAAATACCAGGGAAGTTATGCTGAAGATCATCTAGACACTTTACCAGACATTTCCAAAAGGGAGGATGATGAGGACTACTCTGTTAGCGACTTCTGGAGCCTTGGGAGGGAAGTGGAGCAGCTTGCTAACAGACTCAGCATGCTGGAACAGCAACCATGCAACTGCACTGCTGCCCCCAGTGGTGTTGTAATGGAACTACAGAGAGATATTATAACCCTGCAACAAACTCTGGAGGCTCATTTGAGTACTTTCCAGAATTTATTCAGATATACAGAAGAGCTGGCTAGCTCCTCTGATGGTGTGAACTTGGACCAGCTGCAGACCATGGTGAGGacaaaagagaggaagagaaagaaaggacaaaATATGAGGAAAAAGGGAGATACAAGCAGCATGCGCAGTAAAAGGCACATTGGTACAAAGTAAGACCACTCCTGGTGACTATCATCATTCCGTTAGATCATCACAAAATCATTACGGGGACACTCTTAGGGGGGCACTAAGGGGgctaaaagacaaaaaaaaaatactgagtaGCTTCTAGACTTTAGATTTGTAAGTACAAAAATTGTGAAAACAACTTCCAGATGATGCATCTTACTGTTGgaagtaaaattttaaaaactcttTTAGCAAATTGGATGTTTGGACTTCATTACACATTTCTGCTAGCTTCCTTACACTCAAAAACTAGTAGGAGAGCAGGAAAAATAAGCAGTCCTATACTGCTATTGCTAGCTAAAGTGGTACAAACTCTTTGGGAAAATCCCCTCCAAGGGTTCTTACCTGTGTAAAAGTGTTCTGCTTGGAAGCACTCAGTTGTACAAAgtacctttaagggttctcccaGGGAGACAACAAAAAATCCCTTAATGTGTAGAATCGTAGTGAGAATCCTAATGATTTTATGACAGATTTGCATAATGCAAGCTGGGTAATTGTAGTGAGAGAACAGATTGTTTATTCAACAATcataaaaaatgtgaattttgcAAGTCTGGGAAAACAAATTTGTTCTACAGAAGACTATAAAAGATGATGTCACTATATGCTAGCTTAATGTTATAAAGCCCTTTAATCAAATTTTACAAGATCACTGGTGCTAGATGACATGATACCATTATCACAACATATtaacatgaaatattttctgtatatcATGGGTATCATCAAGTATTGTTGCTTTTACAAATCCATGGCTGCTTACTGTAATAAGTATCTgattatacattattttctgtttataccattattttctctttaattttccCTCCTTCTTTTTGAAAGTGTTGAATAGAACATTCTTTCTgtgtctcatttttatttatagtattgcagtatatttttgccatattgctCATCTTGCAAATAAGCTTTACAAGTAAAATACaagtaaaaatgttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234567 lncRNA upstream 198226 17670180 ~ 17670945 (+) True G198088
TU234570 lncRNA upstream 292585 17575940 ~ 17576586 (+) True G198091
TU234559 lncRNA upstream 294938 17572305 ~ 17574233 (+) True G198081
TU234560 lncRNA upstream 297166 17570664 ~ 17572005 (+) False mta3
TU234562 lncRNA upstream 300009 17568378 ~ 17569162 (+) True G198084
TU234657 lncRNA downstream 37144 17915426 ~ 17918595 (+) True G198170
TU234661 lncRNA downstream 55748 17934030 ~ 17934370 (+) True G198174
TU234664 lncRNA downstream 59250 17937532 ~ 17937771 (+) True G198177
TU234706 lncRNA downstream 106881 17985163 ~ 17985468 (+) True G198213
TU234779 lncRNA downstream 259869 18138151 ~ 18139043 (+) True G198279
XM_026914964.2 mRNA upstream 18313 17832805 ~ 17850858 (+) True glud1b
XM_026914794.2 mRNA upstream 46881 17796028 ~ 17822290 (+) True epas1a
XM_026915176.2 mRNA upstream 76542 17732760 ~ 17792629 (+) True prkcea
XM_026915577.2 mRNA upstream 157359 17708916 ~ 17711812 (+) True six3b
XM_026914979.2 mRNA upstream 203793 17643020 ~ 17665378 (+) False ppm1bb
XM_026915649.2 mRNA downstream 231357 18109639 ~ 18120051 (+) True gpr142
XM_026915470.2 mRNA downstream 244875 18123157 ~ 18126303 (+) True itln3
XM_034309643.1 mRNA downstream 249717 18127999 ~ 18136358 (+) False gprc5c
XM_026915815.2 mRNA downstream 249720 18128002 ~ 18136358 (+) True gprc5c
XM_026914778.2 mRNA downstream 272209 18150491 ~ 18153090 (+) True oxld1
trnai-uau_6 other upstream 291795 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 1005676 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 4310658 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 4310742 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 5395432 12472683 ~ 12473739 (+) False LOC113527673
TU234778 other downstream 276869 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 563604 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 927803 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 927841 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 1648360 19526642 ~ 19566684 (+) False LOC113527713

Expression Profile